Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 430 2e-115 seq4563 116 5e-21 >seq1 Length=22559587 Score = 430 bits (476), Expect = 2e-115 Identities = 1242/1891 (66%), Gaps = 40/1891 (2%) Strand=Plus/Plus Query 68361 ATCCTTATCCAATGTAAACTGAATGG-GTGAGGATGCGGGTTTTGTACGTAGATAGTACA 68419 || ||| || | || |||||||| | || | | || || ||||| || || || |||| Sbjct 20041581 ATTCTTGTCTACAGTGAACTGAATAGCGTTTGCA-GCTGGCTTTGTGCGCAGGTAATACA 20041639 Query 68420 TACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAAC 68479 | || ||||| ||||| |||| || || || || || ||||| || Sbjct 20041640 TTCCAGTTTTTAGACCAGCTTTCCAGGAATAAAAGTGTATGGAAGTAAGTTTTCCGTAGT 20041699 Query 68480 TTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTG 68539 |||| || || | |||||| || | ||| ||||| ||||| || || || |||| ||||| Sbjct 20041700 TTGGCTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATAAACGCACCTCGATCTG 20041759 Query 68540 CCGCCATTTTTATAATACTCTTT--TGAGGAATTTCCCAAATAGTCTT--AAAAATCTGT 68595 | ||||| || ||| | |||| |||| |||||||| | ||| || | | ||| Sbjct 20041760 CGGCCATCTTAATAGTGGACTTTACTGAG--ATTTCCCACACAGTTTTGTACAGATCGC- 20041816 Query 68596 TTGATATCATCTGG---AAGGC-TCG-TATTTTGAATGGATCCACCATCGGATATAATTA 68650 || | | ||||| | ||| || ||||||| || || || | ||| || ||| Sbjct 20041817 --GA-ACCTTCTGGGGGATGGCCTCAATATTTTGGATTGAGCCCCTGCTGGAAATGATTT 20041873 Query 68651 TATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGAT 68710 ||||| || || || | |||||| | |||||||| | || | | ||| | | Sbjct 20041874 GGTTCTTCATATCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGT 20041933 Query 68711 TAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTT 68770 |||| | ||| ||||| ||||| | |||| | || |||||||| | || || || | Sbjct 20041934 TAACCACTTGGAATTCTCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTAAGGCT 20041993 Query 68771 CCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCA 68830 | | ||||| || || |||| |||||||||||| || ||||| |||||||| || |||| Sbjct 20041994 CGAATGATTCGTTGTTACCCATAATTTGAGCAGTAGAAGCAGTGGGCATAGGAGCAACCA 20042053 Query 68831 ATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAA 68890 | | || | | ||| || | |||| || || || | | ||| ||||||| Sbjct 20042054 ACAGGGAGTTCCGGACACCGTGCTTCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAA 20042113 Query 68891 GATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATC 68950 | | | ||| | | ||| | ||||| || |||||||| || || | || Sbjct 20042114 GGTTCGTTGGCTCTTTGTCCCACATGTCGTACTGCAGAATTCCTTTGCTCACGGGGCTTC 20042173 Query 68951 CATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCAC 69010 | | ||| |||||||| || ||||| | || ||||||||||| || || || || | Sbjct 20042174 CCTCATAGGTTTCATATGGACCTTCGATCTGGGCCAGTTCACAACTGGCTTCCAAAGCGC 20042233 Query 69011 CGTAATAAATTGTTTCGAAAATCTTCTTATT-GAGATCTTGTGCTTCTAGACTATCGAAT 69069 |||| || || ||||||||||||| || ||| ||| | ||||| ||| || | Sbjct 20042234 CGTAGTAGATAGTTTCGAAAATCTGCTGATTCAAGAGGCCG-GCTTCATCACTTTCATAG 20042292 Query 69070 GGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTA 69129 || | | | ||||| || || || || |||||||| || || || || | || | | Sbjct 20042293 GGGAACCGCATGAGAATCAAGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGACGA 20042352 Query 69130 TGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 69189 || ||| ||| || | | || ||||| | || || | |||||||| || || || Sbjct 20042353 TGCCTCAAATTGGATTTCTTGGCCTCTGGCAGGGGGTAGAAGTTAATATCGATTATCTTG 20042412 Query 69190 TTAAGATT-TCGGACTACTACTT--TAACCACGTCCTTTAGTTTGAGAAAATCAAATCGT 69246 |||||||| | || | ||| || || ||||| ||||| ||||| || || Sbjct 20042413 TTAAGATTCTTGGTAACCGTCTTGGTA---ACTTCCTTAAGTTTCTTGAAATCGTAT-GT 20042468 Query 69247 CCATCT-----ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCT 69301 | ||| | |||||||| || || || | ||||| | || |||||||| | || Sbjct 20042469 -CTTCTCGGGAGTGACAAACATGTTGAGGGCGATGGATGCCAAGTTGCAAACTGCAATCT 20042527 Query 69302 CATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCA 69361 ||| | | | ||| | || || ||||| || | ||| ||||| ||||| || || | Sbjct 20042528 CATCCGGAGCGGAATACTCTACGATTTCTGTGCACAAATTGCTACACTTGATGGTGCCGA 20042587 Query 69362 GATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAG 69421 ||| ||||| || ||||| |||| ||||| ||||| | | || | || | |||| Sbjct 20042588 CATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCCTTAAACAACATGTAGGGGTTTCCAG 20042647 Query 69422 TTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGT 69481 |||| | ||| | ||| ||||| | ||| | | ||| || | | ||| Sbjct 20042648 TTTCGACCTGTGCTTCAATAATGGCAAACCACAGGGATTGAGCCTTAACAGTTCTGTTGG 20042707 Query 69482 AACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCAT 69541 ||| ||||| ||||||| ||| | | |||||||||||| ||||| ||||| | Sbjct 20042708 CACGACCCTCTTGCTCATATTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGT 20042767 Query 69542 CCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTT 69601 | ||||| |||| || ||| ||||| | ||||| | ||| ||| || || | Sbjct 20042768 GAAGCCCAGGGCATTTATGTGGGCACATTAGCGACCAATCTCCATTGGCCTCGACGCGCT 20042827 Query 69602 TCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCAT 69661 ||||||| |||||||| ||||| || || ||| ||||| | || | |||||| || | Sbjct 20042828 TCATAAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGGGCCCGATTTTCCTCCT 20042887 Query 69662 TTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 69721 | || || ||||| ||||| || || ||||| | | ||| || ||||| || || || | Sbjct 20042888 TGCCGGTGTTTTTCTTAAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGT 20042947 Query 69722 ATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTAT 69781 | || || | | | || || || || ||||| ||||| | || | || || | Sbjct 20042948 AAATGGCAAAGGCACCGGGACGCTTGCCACCTCCTTGATCCACATAACGCGCCACATTGT 20043007 Query 69782 TATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAAC 69841 | |||| |||| ||| |||| | ||||| ||| | ||||| ||||| |||| | Sbjct 20043008 TGAAGACCCTCAACATGGGAACCAAGCCATTGGATGTGCCATTCGTTCCGCAAATCGAGG 20043067 Query 69842 TTCCTCTTGCGCGAATATTACTAATAGA----TAGACCTATTCCTCCTGCCATTTTAGAG 69897 | || |||| || || ||| || || || || || || ||| ||| ||| Sbjct 20043068 TGCCCTTTGCCCGGAT----GCAATGGACGTTAAGTCCAATGCCGCCGGCCGATTTCGAG 20043123 Query 69898 ATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTA 69957 || | ||||| ||| || | | | | || ||||| || || | ||||| | Sbjct 20043124 ATCAAGGCACACTGTTCCACGGACTTAAAAATGCCCTCGATAGAGTCGGCCGTCATGGTC 20043183 Query 69958 AGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGAT 70017 | || || || |||| || | | | || | || ||| | ||| || || Sbjct 20043184 AAGAGGAAGCAAGACGACAGCTGCGGGCGATTTGTGGCAGCGGCAAAAAGTGTTGGCGAC 20043243 Query 70018 GCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC 70077 || || ||||| || || || | ||||| || ||||| | || | ||||||||| Sbjct 20043244 GCATGCGTGAAGTATCGCTCCGACAAGAGATTATAAGTTTCCACGGCCGCATCTATATCC 20043303 Query 70078 CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTA 70137 | ||| ||||| ||||| || |||||||||||||| || || || ||| | |||| Sbjct 20043304 TCCCCATGGATTCCGATCGCCACGCGCATCAACATATGTTGCGGACGCTCTGCAATTTTT 20043363 Query 70138 TTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAA 70197 ||| | |||| ||| || || ||| || || ||||||||||| ||||| || | Sbjct 20043364 CCGTTTCTCTTCAGCAGATAGGAACGTTCTAGGGTCTTAAACCCAAAGTAGTTATACCCA 20043423 Query 70198 AAGTCTCTTTCGTAAATAATAACAGAATTTA 70228 ||||| | ||||| || ||| ||| |||| Sbjct 20043424 AAGTCGCGGTCGTAGATTATAGAAGAGTTTA 20043454 >seq4563 Length=14502029 Score = 116 bits (128), Expect = 5e-21 Identities = 470/734 (64%), Gaps = 11/734 (1%) Strand=Plus/Minus Query 39317 ACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 39376 |||||||| ||||| || || || ||||| || || || || || || |||| Sbjct 3739895 ACTCCCATGCGCTGGTACTCGCCCACCTTCTTCTCAAAGAAGTTCGTCTTTCCGTCCAGC 3739836 Query 39377 GATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAAT 39436 || || | |||||||| | ||| || || | | ||| || |||| || | || Sbjct 3739835 GAGATCATCTCCATGAAGTTAAAGGGGTTCTTGGTATTGTAGATTTTGCCAACGCTCAAC 3739776 Query 39437 TCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATT 39496 || | || || || || || ||||| ||||| ||| | || || ||||| Sbjct 3739775 TCCACCAGCAGTCGGTCCGCCACGAATTCAATGTACTGCGACATAAGATCGCAGTTCATG 3739716 Query 39497 CCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCT 39556 || ||||| || || || | || || |||| ||||| | || ||| | || || || Sbjct 3739715 CCGATGAGGTTTACGGGCAAGGCATCGGTTAAGAACTCCTGCTCAATGGCCACCGCATCG 3739656 Query 39557 GTTATTATC--GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTA 39614 || ||| |||| | | ||| || ||| | |||| || || | ||||| | Sbjct 3739655 CGGATGATCTCGATGATGCG--CTCGCGCCTGGGTCGCTGCACCAAGTGCTGGAACATCA 3739598 Query 39615 AGCA-GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||| ||| ||||| ||||| | |||||| || | || | ||||| || || || Sbjct 3739597 -GCACGGCAAAGTCGCAATGCAAGCCCTCGTCGCGGGAGATAAGCTCGTTGGAGAAGGTC 3739539 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAG 39733 ||||| ||||| ||||| ||||| || ||||| || |||| ||||| || ||| Sbjct 3739538 AGTCCCGGCATCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAG 3739479 Query 39734 AAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATG- 39792 |||||||| || || || || || |||| | | ||| ||| || ||| ||| | Sbjct 3739478 AAGATGCCCTCGACGGCAGCGAAGGCAATGATGCGCTCCCCG-AAATTGGCCGATTTGGA 3739420 Query 39793 ---TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 ||||| | ||||| || || || ||| ||| |||||||| || || || Sbjct 3739419 GGAGATCCAGGAAAGGGCCCAGTCCGCCTTGCGCTTCACAGCCGGCATTGTCTCGATGGC 3739360 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 || || || || | | || ||| | || || || || | || ||| || Sbjct 3739359 GTTGAACAGGTAGTCCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTA 3739300 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 |||||| || || | ||| || || || || || || || || || || | || || || Sbjct 3739299 CATTTCCGAGTGCACGTTCTCCATGGCGATTTGGAAGCCATAGAAGCACCGAGCCTCCGT 3739240 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 || || ||||| || || | ||| ||| || || ||||| || ||||| || Sbjct 3739239 GATCTGCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTCACGATGCCATCGGATGC 3739180 Query 40030 GGCAAAAAATGCCA 40043 |||||| || |||| Sbjct 3739179 GGCAAAGAAGGCCA 3739166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686834270395200