Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4563 107 2e-18 seq648 107 2e-18 >seq4563 Length=14502029 Score = 107 bits (118), Expect = 2e-18 Identities = 235/350 (67%), Gaps = 3/350 (1%) Strand=Plus/Plus Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 || || || || || ||||| || ||||| ||||| || || | || |||||||||||| Sbjct 3739243 GAGGCTCGGTGCTTCTATGGCTTCCAAATCGCCATGGAGAACGTGCACTCGGAAATGTAC 3739302 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCG 44050 ||| | ||||| || || |||||| ||| ||| || | | |||| || || Sbjct 3739303 AGTGTGCTGATCGACACTTACATCCGGGATCCGCATCAGCGGGACTACCTGTTCAACGCC 3739362 Query 44051 ATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT-AAATTC 44109 || || ||| | || || | || | || || |||||||||||| ||||| | | Sbjct 3739363 ATCGAGACAATGCCGGCTGTGAAGCGCAAGGCGGACTGGGCCCTTTCCTGGATCTCCTCC 3739422 Query 44110 AAAT--GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTT 44167 |||| | ||| || || || | | || || || | || || ||||| ||||| Sbjct 3739423 AAATCGGCCAATTTCGGGGAGCGCATCATTGCCTTCGCTGCCGTCGAGGGCATCTTCTTC 3739482 Query 44168 TCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACG 44227 || ||||| |||| || ||| | ||||| || ||| ||||||| || |||| Sbjct 3739483 AGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACC 3739542 Query 44228 TTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 || || || ||| | || || || || ||||| |||||||| ||||| Sbjct 3739543 TTCTCCAACGAGCTTATCTCCCGCGACGAGGGCTTGCATTGCGACTTTGC 3739592 >seq648 Length=4127866 Score = 107 bits (118), Expect = 2e-18 Identities = 437/678 (64%), Gaps = 18/678 (3%) Strand=Plus/Minus Query 19273 ATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGA 19332 |||||||| |||| |||| || ||||| ||| | |||| | | | ||| |||| Sbjct 1600555 ATCTTTCGGCGAGCCTTTGCCTCCCGTGTCTTTCCACCAGAGCTTGTGGAGCAACTGGGC 1600496 Query 19333 TGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATT 19392 || || || || || | |||| ||||| || ||||| ||| ||||| || || Sbjct 1600495 TGCAAGCACGTCAAGGGCATCCTGCTGTATGGTCCTCCGGGAACTGGCAAAACTTTGATG 1600436 Query 19393 GCGAGAGAACTTAGTAAATTACTTACAAAACAACCT---CCCAAAATTGTAAATGGTCCT 19449 || | || || | | | || ||| | | | || || || || ||||| || Sbjct 1600435 GCCCGTCAAATTGGCACCATGCT--CAATGCC-CGTGAGCCGAAGATCGTCAATGGACCG 1600379 Query 19450 GAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGAC 19509 | ||| | | |||||||| || ||||||| | ||||| ||||| | || || || Sbjct 1600378 CAGATCCTCGACAAATATGTGGGCGAATCGGAGGCCAATGTGCGACGCCTTTTCGCCGAG 1600319 Query 19510 GCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGAT 19569 || || || || | || ||| | || | ||| ||| || || || || || | ||| Sbjct 1600318 GCCGAGGAGGAGGAGAAGCGTCTGGGACCCAACAGTGGGTTACATATCATCATCTTCGAT 1600259 Query 19570 GAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGGT-GTAAAT---GGAGTACATGAC 19623 ||| | || || || || ||||| | || || ||| | |||| || || || ||| Sbjct 1600258 GAAATCGATGCCATTTGCAAGCAGCGTGGCTCCGTGGCCGGAAATAGTGGTGTCCACGAC 1600199 Query 19624 ACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTA 19683 || || ||||| || || ||| | || | || || ||| | || ||||| || || | Sbjct 1600198 ACCGTGGTCAACCAGCTGCTGACCAAGATCGATGGCGTTGATCAGCTGAACAACATCCTG 1600139 Query 19684 GTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGG 19743 || ||||||||||| ||| | ||| | || || || | | |||||||| || Sbjct 1600138 GTAATTGGCATGACCAATCGCAGGGACATGATCGATGAGGCTCTGCTGCGACCCGGCCGC 1600079 Query 19744 TTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAAC 19803 | || | | || || || | | ||| | ||| || || || | || | || Sbjct 1600078 CTCGAGGTCCAAATGGAGATCAGTCTGCCCAACGAACAGGGTCGCGTCCAGATCCTCAAT 1600019 Query 19804 ATACATACATCAA--CCATGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGAA- 19860 || | ||| ||| |||||| | ||| | || |||||||| || | | || Sbjct 1600018 ATCC--ACACCAAGCGCATGCGCGACTTCAACAAGATCAACGACGATGTGGA-CAACAAG 1599962 Query 19861 GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCC 19920 || ||||| ||| ||||| || | ||||| || ||||| |||||||| ||| | ||| Sbjct 1599961 GAGATTGCCGCGCTGACCAAGAATTTCAGCGGAGCCGAACTGGAGGGATTGGTGCGTGCC 1599902 Query 19921 GCCCAATCAATTGCAATG 19938 ||||| || | ||| ||| Sbjct 1599901 GCCCAGTCGAGTGCCATG 1599884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397413954123400