Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 239 4e-58 seq4812 122 7e-23 seq3325 113 4e-20 seq2 113 4e-20 >seq1 Length=22559587 Score = 239 bits (264), Expect = 4e-58 Identities = 994/1556 (64%), Gaps = 27/1556 (2%) Strand=Plus/Plus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || ||||| ||||| || || | || ||||| ||||||| |||||||| || Sbjct 20041585 TTGTCTACAGTGAACTGAATAGCGTTTGCAGCTGGCTTTGTGCGCAGGTAATACATTCCA 20041644 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGGTAATTGGGT 130525 ||||| || ||| ||| |||| ||| ||| | | || ||| || || Sbjct 20041645 GTTTTTAGACCAGCTTTCCAGGAATAAAAGTGTATGGAAGTAAGTTTTCCGTAGTTTGGC 20041704 Query 130526 TGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCC 130585 | ||||| ||||||| ||| || ||||| ||||| || || | ||||| ||| Sbjct 20041705 TCTGCCACATGAATGTTGAACGACTGACTCTGATCTATAAACGCACCTCGATCTGCGGCC 20041764 Query 130586 ATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGT 130645 || | | ||| || | || ||||| | || ||||| ||||| | || | Sbjct 20041765 ATCTTAATAGTGGACTTTACTGAGATTTCCCACACAGTTTTGTACAGATCGCGAACCTTC 20041824 Query 130646 TTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCATA 130705 | ||| ||| | |||| ||| | || || ||| || |||| ||| |||| Sbjct 20041825 TGGGGGATGGCCTCAATATTTTGGATTGAGCCCCTGCTGGAAATGATTTGGTTCTTCATA 20041884 Query 130706 CTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGA 130765 | || |||| | |||| || || ||| |||||||| |||| | ||| Sbjct 20041885 TCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAACCACTTGG 20041944 Query 130766 AAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCG 130825 || || |||| ||| || || || ||||| || | ||| | || || || |||||| Sbjct 20041945 AATTCTCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTAAGGCTCGAATGATTCG 20042004 Query 130826 TTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTA 130885 ||||| || | ||||| || |||| || |||||||| || || || || || || Sbjct 20042005 TTGTTACCCATAATTTGAGCAGTAGAAGCAGTGGGCATAGGAGCAACCAACAGGGAGTTC 20042064 Query 130886 CGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGT 130945 || | ||||||| || |||| ||||| || | ||| ||||| || || || Sbjct 20042065 CGGACACCGTGCTTCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTCGTTGGC 20042124 Query 130946 TTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAAC 131005 | | |||| |||||| || | || || || ||||| || |||| || || | Sbjct 20042125 T---CTTTGTCCCACATGTCGTACTGCAGAATTCCTTTGCTCACGGGGCTTCCCTCATAG 20042181 Query 131006 GATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAA 131065 | ||| || ||||||| | ||||| || || ||||||||||| ||||| || Sbjct 20042182 GTTTCATATGGACCTTCGATCTGGGCCAGTTCACAACTGGCTTCCAAAGCGCCGTAGTAG 20042241 Query 131066 ATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTC 131125 || |||||| ||| || | ||| || | |||| | || || || || || | Sbjct 20042242 ATAGTTTCGAAAATCTGCTGATTCAAGAGGCCGGCTTCATCACTTTCATAGGGGAACCGC 20042301 Query 131126 ATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAA 131185 || | ||| || ||||| |||| ||||| | || | |||||| || | ||| | ||| Sbjct 20042302 ATGAGAATCAAGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGACGATGCCTCAAA 20042361 Query 131186 TTACATTTACGCGAACATTCG-GTGGGATAAAGGTTAATGTCAATTATTTTGTTTAAATT 131244 || |||| | | | | | ||| || | |||||| || ||||| ||||| | ||| Sbjct 20042362 TTGGATTT-CTTGGCCTCTGGCAGGGGGTAGAAGTTAATATCGATTATCTTGTTAAGATT 20042420 Query 131245 GCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAG 131304 || | | || || || | ||| | |||||| | || | ||| | Sbjct 20042421 CTTGGTAACCGTCTTGGTAACTTCCTTAAGTTTCTTGAAATCGTATGT---CTTCTCGGG 20042477 Query 131305 GTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATC 131364 | ||||| || | || || |||| || |||||||| | || || | | Sbjct 20042478 AGTGACAAACATGTTGAGGGCGATGGATGCCAAGTTGCAAACTGCAATCTCATCCGGAGC 20042537 Query 131365 GCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTG 131424 | |||||| || ||||| | ||||||||| || | ||| |||||||| | ||| || || Sbjct 20042538 GGAATACTCTACGATTTCTGTGCACAAATTGCTACACTTGATGGTGCCGACATTCTGCTG 20042597 Query 131425 ATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTT 131483 ||||| || | | || | ||||| ||| ||||||||| | || |||||||| | Sbjct 20042598 GTTGCTCTT-CCTGTTGCAGGCATCCTTAAACAACATGTAGGGGTTTCCAGTTTCGACCT 20042656 Query 131484 GAGTTTCAATAATG--TATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGC- 131540 | | |||||||||| | | | || | || |||| || | | || | ||||| Sbjct 20042657 GTGCTTCAATAATGGCAAACCACAGGGATT--GAGC-----CTTAACAGTTCTGTTGGCA 20042709 Query 131541 CG--CGTTTT--TCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCC 131596 || | | || || || || || |||||| |||| || | | ||| || | || Sbjct 20042710 CGACCCTCTTGCTCATATTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGA 20042769 Query 131597 AAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTC 131656 | || |||| || |||||||||||||| | || || || || |||||| Sbjct 20042770 AGCCCAGGGCATTTATGTGGGCACATTAGCGACCAATCTCCATTGGCCTCGACGCGCTTC 20042829 Query 131657 ATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTA 131716 ||||| | ||| || | ||| | ||||| |||||||| | || || || || | Sbjct 20042830 ATAAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGGGCCCGATTTTCCTCCTTG 20042889 Query 131717 CCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATAC 131776 || | |||| || | | | || || || | |||| |||||||| |||| || Sbjct 20042890 CCGGTGTTTTTCTTAAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAA 20042949 Query 131777 ACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAACCATGTTGTTG 131833 | || | || || ||||| ||| ||||||| |||| ||| ||| |||||| Sbjct 20042950 ATGGCAAAGGCACCGGGACGCTTGCCACCTCCTTGATCCACATAACGCGCCACATTGTTG 20043009 Query 131834 TATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTG 131893 | || | ||||||||| |||| || |||| | ||||| || | ||| || || Sbjct 20043010 AAGACCCTCAACATGGGAACCAAGCCATTGGATGTGCCATTCGTTCCGCAAATCGAGGTG 20043069 Query 131894 CCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGAT 131949 || || || | ||| || ||||| |||||||| || ||| | |||| ||||| Sbjct 20043070 CCCTTTGCCCGGATGCAATGGACGTTAAGTCCAATGCCGCCGGCCGATTTCGAGAT 20043125 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | |||| || | || || || || || || ||||||||| | Sbjct 1136945 CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1137004 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| || ||||| || |||||| | || |||||||| ||||| || || Sbjct 1137005 AGGGTTCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 1137064 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGT-GGCTTCAAC 27199 | ||||| || || ||||||| |||| | || | ||||| | |||| || | Sbjct 1137065 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACC 1137124 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | | || || || | ||||| || || |||||||| ||||||||||| Sbjct 1137125 TCCAAG-GTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 1137171 >seq4812 Length=908733 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||||||| || || || || || ||||| ||||| ||| | Sbjct 620059 CCACCACGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGAC 620118 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || ||||| || |||||| | ||||||||||| ||||| || || Sbjct 620119 AAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 620178 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||||||| ||| | | |||| | ||||||| | || || Sbjct 620179 ATACCCTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCTGAAGGCTCCACC 620238 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || |||||||| || ||||| ||||| Sbjct 620239 TCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTGACGAAGATCTGCAT 620285 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| |||| || || || || ||| Sbjct 619861 GTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCCTCCAGTTGCTTGCCG 619920 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | ||||| || || ||||||| || Sbjct 619921 GCGAAGATGAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTG 619980 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | || || | | || ||||| ||||| || | || || |||| ||| Sbjct 619981 ACGTTTTCAATGGTATCAGAAGGCTCGACTTCCAGAGTAATGGTCTTTCCGGTCAAAGTC 620040 Query 27231 TTCACAAAGATTTGCATA 27248 ||||| |||||||||||| Sbjct 620041 TTCACGAAGATTTGCATA 620058 >seq3325 Length=21082 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || || || || || || ||||| ||||| ||| | Sbjct 20297 CCACCACGCAGACGGAGAACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGAC 20238 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || |||||| | ||||||||||| ||||| || || Sbjct 20237 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 20178 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| || | | |||| | ||||| | | ||| || Sbjct 20177 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCAATGGTGTCCGAAGGTTCCACC 20118 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || |||||||| |||||||| ||||| Sbjct 20117 TCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTGACAAAGATCTGCAT 20071 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | ||||| || | || || || || || || ||||| || | Sbjct 19841 CCACCGCGTAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 19782 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || ||||| || |||||| ||||||||||||| ||||| || || Sbjct 19781 AAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGG 19722 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| |||| | || | || || | | |||||| Sbjct 19721 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCTCAACT 19662 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | |||||| |||| ||| || |||||||| ||||| Sbjct 19661 TCAAGAGTGATGGTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 19615 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | ||||| || | || || || || || || ||||| || | Sbjct 20069 CCACCGCGTAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 20010 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || ||||| || |||||| ||||||||||||| ||||| || || Sbjct 20009 AAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGG 19950 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| |||| | || | || || | | |||||| Sbjct 19949 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCTCAACT 19890 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | |||||| |||| ||| || |||||||| ||||| Sbjct 19889 TCAAGAGTGATGGTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 19843 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | ||||| || | || || || || || || ||||||||| | Sbjct 19613 CCACCGCGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 19554 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| || || ||||| |||||| | || |||||||| ||||| || || Sbjct 19553 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGG 19494 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| ||| ||| |||| | || | || || | || || || Sbjct 19493 ATGCCCTCCTTATCCTGGATTTTGGCCTTCACATTCTCAATCGTATCGGAGGGCTCCACC 19434 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | || || |||| || ||||||||||| ||||| Sbjct 19433 TCCAAAGTAATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 19387 >seq2 Length=2985096 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || |||| |||| |||||||| || ||||| || || || |||||||||||| Sbjct 124194 GCCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGA 124135 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || |||| |||| || | ||| || |||||| | || | |||||| || || || || Sbjct 124134 CAAAGTGCGTCCGTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGG 124075 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | | || | || || | | ||||| Sbjct 124074 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAAC 124015 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || | ||| || | ||||| ||||| || ||||| ||||| |||||| || Sbjct 124014 CTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATACCT 123963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424889447252160