Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq4563 116 1e-20 >seq4563 Length=14502029 Score = 116 bits (128), Expect = 1e-20 Identities = 353/534 (66%), Gaps = 26/534 (5%) Strand=Plus/Plus Query 443337 TTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTA 443396 || |||||| |||||||| | ||||| ||||||||| || |||| ||| || || || Sbjct 3739075 TTCTGGACCGTGGAGGAGGTGGATCTGTCCAAGGACCTGACCGACTGGCAC---CGCCTG 3739131 Query 443397 TCTAGCCATGAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGT 443456 | | ||||| | ||| || | | ||||||||||||| | ||| || Sbjct 3739132 AAGGACGACGAACGTCACTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCATCCGATGGC 3739191 Query 443457 ATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCCCGC 443516 ||||| ||||| |||||| ||| ||| | ||| | ||| ||||| || Sbjct 3739192 ATCGTGAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCTCGG 3739251 Query 443517 TACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTG 443576 | |||||| | |||||| ||| ||||||||| | ||| | || | |||||| | || Sbjct 3739252 TGCTTCTATGGCTTCCAAATCGCCATGGAGAACGTGCACTCGGAAATGTACAGTGTGCTG 3739311 Query 443577 ATCAAGACACTAAT-TCCGAACGAAGACGAA-CAGCGGTCC-ATCTTCTCATCGT--TCA 443631 ||| |||||| | |||| | | || | |||||| | | || ||| || || Sbjct 3739312 ATC--GACACTTACATCCG---GGATCCGCATCAGCGGGACTACCTGTTCAACGCCATCG 3739366 Query 443632 TGACCACGCCAGGCATCACTGAA----AAGACTCGCTGGGCAAAACAGTGGCTCGAACGA 443687 ||| | ||| | | |||| ||| | |||||| ||| || | Sbjct 3739367 AGACAATGCCGG----CTGTGAAGCGCAAGGCGGACTGGGCCCTTTCCTGGATCT--CCT 3739420 Query 443688 GAAAATCT--CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGT 443745 ||||| || |||| ||||| | | || || |||| ||||| || | || | Sbjct 3739421 CCAAATCGGCCAATTTCGGGGAGCGCATCATTGCCTTCGCTGCCGTCGAGGGCATCTTCT 3739480 Query 443746 TTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTG 443805 | |||||||||||| |||||||| |||||| |||| ||||| || || |||| || ||| Sbjct 3739481 TCAGCGGCAGCTTT-GCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTG 3739539 Query 443806 ACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCC 443859 ||||| ||||| || ||| || |||||||| |||||||||||||| ||| Sbjct 3739540 ACCTTCTCCAACGAGCTTATCTCCCGCGACGAGGGCTTGCATTGCGACTTTGCC 3739593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588159357182600