Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 190 3e-43 >seq1 Length=22559587 Score = 190 bits (210), Expect = 3e-43 Identities = 640/987 (65%), Gaps = 17/987 (2%) Strand=Plus/Plus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || || || |||||||| || || || |||| || ||||||| ||||| || || || Sbjct 20041972 TAAATATTCGTTGTGTAAGGCTCGAATGATTCGTTGTTACCCATAATTTGAGCAGTAGAA 20042031 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 || || ||||| || || | ||| || ||| || | ||| | || ||||||| ||| Sbjct 20042032 GCAGTGGGCATAGGAGCAACCAACAGGGAGTTCCGGACACCGTGCTTCTTGATGGACTCC 20042091 Query 110828 TTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCTT---CCCACATGTCAAACTGA 110884 || || | |||||| | || || ||| ||| |||||||||| |||| Sbjct 20042092 TTCAGTTTCTGCCAGTCCCAA---AGGTTCGTTGGCTCTTTGTCCCACATGTCGTACTGC 20042148 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | |||| | | |||| |||||| |||||||||| | ||||| | | ||| Sbjct 20042149 AGAATTCCTTTGCTCACGGGGCTTCCCTCATAGGTTTCATATGGACCTTCGATCTGGGCC 20042208 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | |||||| || || |||| | ||| || || ||||| || || | ||||| Sbjct 20042209 AGTTCACAACTGGCTTCCAAAGCGCCGTAGTAGATAGTTTCGAAAATCTGCTGATTCAAG 20042268 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 111064 ||||||||| ||| | | | | || | ||| || | || |||| || Sbjct 20042269 AGGCCGGCTTCATCACTTTCATAGGGGAACCGCATGAGAATCAAGGCGTCAGCGAATCCC 20042328 Query 111065 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAACGGG 111123 || ||||| | || | || | || | || ||| || |||| | ||| | ||| Sbjct 20042329 TGGACACCGATGCCCACGGGACGATGCCTCAAATTGGA-TTTCTTGGCCTCTGGCAGGGG 20042387 Query 111124 ATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG 111183 || || || | || || | ||| ||||| |||||||| |||| || | ||| | Sbjct 20042388 GTAGAAGTTAATATCGATTATCTTGTTAAGATTCTTGGTAACCGTCTTGGTAACTTCCTT 20042447 Query 111184 AAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGA 111243 |||||| | |||| | || |||| | ||||| || | |||||||| || Sbjct 20042448 AAGTTTCTTGAAATCGTATGT---CTTCTCGGGAGTGACAAACATGTTGAGGGCGATGGA 20042504 Query 111244 TGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAA 111303 |||||| |||||||| || |||||||| | | | ||||||| |||||||| || || Sbjct 20042505 TGCCAAGTTGCAAACTGCAATCTCATCCGGAGCGGAATACTCTACGATTTCTGTGCACAA 20042564 Query 111304 GTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTT 111363 ||| || ||| || || || | ||||| ||||| |||||| ||||||| |||||||| Sbjct 20042565 ATTGCTACACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCCTT 20042624 Query 111364 GTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA--CA 111421 | | ||||||||| | || || || ||||| || | ||| || ||| | | Sbjct 20042625 AAACAACATGTAGGGGTTTCCAGTTTCGACCTGTGCTTCAATAATGGCAAACCACAGGGA 20042684 Query 111422 TCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCT 111481 | | || ||| | |||||| || ||||| ||| || || || | | Sbjct 20042685 TTG--AGCCTTAACAGTTCTGTTGGCACGACCCTCTTGCTCATATTTCTCATACAACTTT 20042742 Query 111482 TCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC 111541 || || || || ||| | | ||| || || || || | ||| || | || ||| Sbjct 20042743 TCGAATTCATCGCCCCACACATCGTGAAGCCCAGGGCATTTATGTGGGCACATTAGCGAC 20042802 Query 111542 CATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAG 111601 || | ||| |||| || |||||||| || || || || |||||||||| |||| Sbjct 20042803 CAATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGTAAAAC 20042862 Query 111602 AGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA-CTCAAGGAACTCCAT 111660 ||||| | |||| || || | || ||| || ||| || |||||||| | Sbjct 20042863 AGATCGCGGGCCCGATTTTCCTCCTTGCCGGTGTT-TTTCTTAAGTTCCAGGAACTCAAA 20042921 Query 111661 GATATCCGCGTGCCATGGCTCAAGATA 111687 || ||||| |||||| ||||| || || Sbjct 20042922 GACATCCGAGTGCCAGGGCTCCAGGTA 20042948 Score = 98.7 bits (108), Expect = 1e-15 Identities = 181/263 (69%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 || || || ||| | | || ||||| || ||||| | |||||| || || || || || Sbjct 4077375 TCCTTGCCGCCCGTCAAGCGAGTACCGAACTGACCGCGTGGCTCCAGGAGATTTATATTA 4077316 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924 |||| || ||||| | ||||| ||||||||||| ||| ||| | || || ||||| Sbjct 4077315 TTTGCGCCCACATAGTTCTGGGCCAGATTAACGATGGTCATCTGCA-GCGAAACCTCACC 4077257 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984 |||||| || || ||| | || || || | | | || ||| |||||||| | ||| Sbjct 4077256 GTGGTGATAGGCCGACATCTCGGCGACGGAACCAGACAGCTGGGCCACCTTAACCTCACG 4077197 Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 ||| |||| | | |||||| | ||||||| || | ||| ||||| | || || Sbjct 4077196 CTTGTCGTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCTGGCTTCAAGCCGTC 4077137 Query 182045 CGCCATATGGGCAATAGAGCGCT 182067 | ||| | || ||| || |||| Sbjct 4077136 CACCAGACTGGGAATGGAACGCT 4077114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627963858528000