Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4563 161 1e-34 >seq4563 Length=14502029 Score = 161 bits (178), Expect = 1e-34 Identities = 304/442 (69%), Gaps = 4/442 (1%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||| |||||| |||||||| ||||| ||||||| ||| ||||||| Sbjct 3739880 TACTCGCCCACCTTCTTCTCAAAGAAGTTCGTCTTTCCGTCCAGCGAGATCATCTCCATG 3739821 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCA-CTCCAATCTGTTTGAGGAGACG 129846 || | ||| |||||||| | || | ||| || || | | | || || || || Sbjct 3739820 AAGTTAAAGGGGTTCTTGGTATTGTAGATTT-TGCCAACGCTCAACTCCACCAGCAGTCG 3739762 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 |||| ||| | |||||||||| ||||| ||| ||||||| ||||||||||| Sbjct 3739761 GTCCGCCACGAATTCAATGTACTGCGACATAAGATCGCAGTTCATGCCGATGAGGTTTAC 3739702 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || | || || | |||| ||| ||||||| |||| || || || | ||| || Sbjct 3739701 GGGCAAGGCATCGGTTAAGAACTCCTGCTCAATGGCCACCGCATCGCGGATGATCTCGAT 3739642 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTCCT 130025 ||| || || ||| || ||| | |||| || ||| | ||||||||| || Sbjct 3739641 GATGCGCT-CGCGCCTGGGTCGCTGCACCAAGTGCTGGAACATCAGCACGGCAAAGTCGC 3739583 Query 130026 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 130085 || | |||||||| |||||||| || || || |||||| ||| || ||||| |||| Sbjct 3739582 AATGCAAGCCCTCGTCGCGGGAGATAAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAGAC 3739523 Query 130086 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 130145 | |||||||||| ||||||||| | ||| ||| ||||||||| ||||| || Sbjct 3739522 CGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAGATGCCCTCGACGG 3739463 Query 130146 ACGCGAACGCAAAGAGACGCTC 130167 ||||| |||| || ||||| Sbjct 3739462 CAGCGAAGGCAATGATGCGCTC 3739441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618368099780800