Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 1e-15 seq4563 86.0 7e-12 >seq1 Length=22559587 Score = 98.7 bits (108), Expect = 1e-15 Identities = 171/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 168457 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 168516 |||||| || ||| | | || ||||| |||||||| | ||||| || ||||| ||||| Sbjct 4077376 ATCCTTGCCGCCCGTCAAGCGAGTACCGAACTGACCGCGTGGCTCCAGGAGATTTATATT 4077317 Query 168517 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTCAC 168575 |||| |||| |||| | |||| || || || || || || || || || |||| Sbjct 4077316 ATTTGCGCCCACATAGTTCTGGGCCAGATTAACGATGGTCATCTGC-AGCGAAACCTCAC 4077258 Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 168635 ||||||| || || | |||| ||||| | | | || ||| ||||| || | |||| Sbjct 4077257 CGTGGTGATAGGCCGACATCTCGGCGACGGAACCAGACAGCTGGGCCACCTTAACCTCAC 4077198 Query 168636 CCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 168695 |||| ||| | | |||||| | | |||| |||||||| || ||||| | || | Sbjct 4077197 GCTTGTCGTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCTGGCTTCAAGCCGT 4077138 Query 168696 CCGCCA 168701 || ||| Sbjct 4077137 CCACCA 4077132 >seq4563 Length=14502029 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||| || ||| | | |||| ||||| |||||||| ||| Sbjct 3739465 GTCGAGGGCATCTTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGT 3739524 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 || ||||| || || ||||||||||||||||||||| || |||||||| Sbjct 3739525 CTGATGCCGGGACTGACCTTCTCCAACGAGCTTATCTCCCGCGACGAGGG 3739574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583197516203200