Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 181 1e-40 seq4563 95.1 1e-14 >seq1 Length=22559587 Score = 181 bits (200), Expect = 1e-40 Identities = 492/753 (65%), Gaps = 0/753 (0%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 ||||||| |||||| || || |||| ||||| ||| ||| | ||||||||||||| Sbjct 20042503 GATGCCAAGTTGCAAACTGCAATCTCATCCGGAGCGGAATACTCTACGATTTCTGTGCAC 20042562 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 ||||| ||||||||||||||| |||| ||||||||||||| ||| ||||| ||| Sbjct 20042563 AAATTGCTACACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCC 20042622 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 || | ||||||| || | || || || ||||| | | || | | ||| | | Sbjct 20042623 TTAAACAACATGTAGGGGTTTCCAGTTTCGACCTGTGCTTCAATAATGGCAAACCACAGG 20042682 Query 79237 TCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTCG 79296 | ||| ||| | ||| ||||||| | | || || ||||||| Sbjct 20042683 GATTGAGCCTTAACAGTTCTGTTGGCACGACCCTCTTGCTCATATTTCTCATACAACTTT 20042742 Query 79297 TTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGC 79356 | ||| | || || | |||||| | || || ||||| | || |||||||| || | Sbjct 20042743 TCGAATTCATCGCCCCACACATCGTGAAGCCCAGGGCATTTATGTGGGCACATTAGCGAC 20042802 Query 79357 CAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAG 79416 || || | | ||| || || ||| ||||| || || ||||||||||| || Sbjct 20042803 CAATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGTAAAAC 20042862 Query 79417 AGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATG 79476 || |||||| || | ||||| | ||| ||| || || || || || | | Sbjct 20042863 AGATCGCGGGCCCGATTTTCCTCCTTGCCGGTGTTTTTCTTAAGTTCCAGGAACTCAAAG 20042922 Query 79477 ATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCC 79536 | || | |||||| |||||||| || ||||| || | ||| |||||||| || || Sbjct 20042923 ACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCACCTCCT 20042982 Query 79537 TGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCG 79596 || | || || || ||| |||||||| || | | |||||| || | ||| | || Sbjct 20042983 TGATCCACATAACGCGCCACATTGTTGAAGACCCTCAACATGGGAACCAAGCCATTGGAT 20043042 Query 79597 ACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCG 79656 ||| ||||| ||| || || || | ||||| ||| | || | ||| Sbjct 20043043 GTGCCATTCGTTCCGCAAATCGAGGTGCCCTTTGCCCGGATGCAATGGACGTTAAGTCCA 20043102 Query 79657 ATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCG 79716 ||||| |||| | | || ||||| || |||| | | | || | ||||||||| Sbjct 20043103 ATGCCGCCGGCCGATTTCGAGATCAAGGCACACTGTTCCACGGACTTAAAAATGCCCTCG 20043162 Query 79717 ATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCG 79776 || |||||| || |||| | | |||||||| ||||| ||| ||| || || | Sbjct 20043163 ATAGAGTCGGCCGTCATGGTCAAGAGGAAGCAAGACGACAGCTGCGGGCGATTTGTGGCA 20043222 Query 79777 GCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG 79809 ||| || || || |||| ||| ||||||||| Sbjct 20043223 GCGGCAAAAAGTGTTGGCGACGCATGCGTGAAG 20043255 >seq4563 Length=14502029 Score = 95.1 bits (104), Expect = 1e-14 Identities = 342/529 (65%), Gaps = 11/529 (2%) Strand=Plus/Plus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| |||| |||||| | || || || ||||||| || ||| || || Sbjct 3739072 TCTTTCTGGACCGTGGAGGAGGTGGATCTGTCCAAGGACCTGACCGACTGGCACCGCCTG 3739131 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 || ||||||| | || |||||| | || ||||||||||| || || ||||| Sbjct 3739132 AAGGACGACGAACGTCACTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCATCCGATGGC 3739191 Query 59733 ATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGG 59792 || |||| || || | | | ||| |||| || ||||| | ||||| ||| Sbjct 3739192 ATCGTGAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCTCGG 3739251 Query 59793 TCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCAT 59851 | ||||| | | || ||| || ||| | ||||| || | |||| | | Sbjct 3739252 TGCTTCTATGGCTTCCAAATCGC-CATGGAGAACGTGCACTCGGAAATGTACAGTGTGCT 3739310 Query 59852 GATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC 59911 |||||| | | || ||||||| | || || |||||| ||||| ||||| Sbjct 3739311 GATCGACACTTACATCCGGGATCCGCATCAGCGGGACTACCTGTTCAACGCCATCGAGAC 3739370 Query 59912 GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATC 59971 || || || || | || || || |||||| | ||||| |||| | ||| Sbjct 3739371 AATGCCGGCTGTGAAGCGCAAGGCGGACTGGGCCCTTTCCTGGATC--TCCTCCAA-ATC 3739427 Query 59972 -----ATTT-GCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGG 60025 |||| | | || |||| || || || ||| || || ||||||||| || Sbjct 3739428 GGCCAATTTCGGGGAGCGCATCATTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGG 3739487 Query 60026 CTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTC 60085 | || | ||||||||||| || ||||| || || |||||||| |||| ||||| Sbjct 3739488 CAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTC 3739547 Query 60086 CAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG 60134 ||||||||| || ||||| ||||||||| | ||| || ||||| ||| Sbjct 3739548 CAACGAGCTTATCTCCCGCGACGAGGGCTTGCATTGCGACTTTGCCGTG 3739596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548465285059200