Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 181 1e-40 >seq1 Length=22559587 Score = 181 bits (200), Expect = 1e-40 Identities = 314/454 (69%), Gaps = 2/454 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||||||||| ||||| ||||| || | ||| | |||||| | || || | ||| || Sbjct 4077555 CCAGTTCCGATGCCCTCAGCACCGTTTACCAGCACCATCGGAATGATGGGCAGGTACCAC 4077496 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 | ||||| | || | | || |||||| ||| | |||| || || ||| ||| Sbjct 4077495 TGGGGCTCAATCTTCTGGCCATCGTCCACCTGGTAGTCCAGCAGCGGATCGTCCAAGGGA 4077436 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | | | ||| |||| | || | | ||||||||| ||||||| || || | Sbjct 4077435 TGGTAGATGAGTCGGGTCAAGGGAGACATCAAAGTGAAAATATAACGAGCACTGGCGCAA 4077376 Query 117332 TCCTTGCCACCAG-CAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 |||||||| || | |||| || |||||||| || || | ||||||| ||| || | || Sbjct 4077375 TCCTTGCCGCCCGTCAAG-CGAGTACCGAACTGACCGCGTGGCTCCAGGAGATTTATATT 4077317 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450 || ||||||||| |||| || |||| || || || || || || ||||||| Sbjct 4077316 ATTTGCGCCCACATAGTTCTGGGCCAGATTAACGATGGTCATCTGCAGCGAAACCTCACC 4077257 Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510 |||||||| |||| | ||| || ||| | || | |||||| |||||||| | || Sbjct 4077256 GTGGTGATAGGCCGACATCTCGGCGACGGAACCAGACAGCTGGGCCACCTTAACCTCACG 4077197 Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | | |||| |||||| ||||| | |||||||||||||||| |||||||| || || Sbjct 4077196 CTTGTCGTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCTGGCTTCAAGCCGTC 4077137 Query 117571 CGCCACGTGAGGGATCGAACGCTTGATGTCCTCA 117604 | ||| || || ||||||| | ||||| || Sbjct 4077136 CACCAGACTGGGAATGGAACGCTCGTTGTCCGCA 4077103 Score = 181 bits (200), Expect = 1e-40 Identities = 316/455 (69%), Gaps = 10/455 (2%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||||||||| |||||||| ||||| | |||||| | || || ||| || Sbjct 4077555 CCAGTTCCGATGCCCTCAGCACCGTTTACCAGCACCATCGGAATGATGGGCAGGTACCAC 4077496 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 | ||||| | || || || || |||| | ||| | || | | || ||| ||| Sbjct 4077495 TGGGGCTCAATCTTCTGGCCATCGTCCACCTGGTAGTCCAGCAGCGGATCGTCCAAGGGA 4077436 Query 151996 TCGAATATCCGTCGAGTCATAGGAC---TCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 | | | || |||| |||| ||| ||||| ||||| || || || | ||||| Sbjct 4077435 TGGTAGATGAGTCGGGTCAAGGGAGACATCAAA---GTGAAAATATAACGAGCACTGGCG 4077379 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 ||||||||| || | || || || || ||||| || ||||| ||||| || | Sbjct 4077378 CAATCCTTGCCGCCCGTCAAGCGAGTACCGAACTGACCGCGTGGCTCCAGGAGATTTATA 4077319 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCA 152172 || || |||||||| | ||||| |||| ||| || || || |||||| | ||| Sbjct 4077318 TTATTTGCGCCCACATAGTTCTGGGCCAGATTAACGATGGTCATCTGCAGCGAAACCTCA 4077259 Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC- 152231 ||||||||||| |||| | ||| |||| | | || | || ||| |||||||| | || Sbjct 4077258 CCGTGGTGATAGGCCGACATCTCGGCGACGGAACCAGACAGCTGGGCCACCTTAACCTCA 4077199 Query 152232 CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAAC 152290 || | ||| |||| |||||| |||| | | |||||||||||||| ||| ||||| | Sbjct 4077198 CGCTTGTC--GTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCTGGCTTCAAGC 4077141 Query 152291 CGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 ||||||||| ||||| ||||||| | ||||| Sbjct 4077140 CGTCCACCAGACTGGGAATGGAACGCTCGTTGTCC 4077106 Score = 114 bits (126), Expect = 1e-20 Identities = 449/702 (64%), Gaps = 8/702 (1%) Strand=Plus/Minus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 ||||| ||||| || ||||||| || || ||||| || |||| ||| ||| ||||| Sbjct 20043257 TACTTCACGCATGCGTCGCCAACACTTTTTGCCGCTGCCACAAATCGCCCGCAGCTGTCG 20043198 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||||| || | |||| || ||||| ||||| ||||| | || | | | Sbjct 20043197 TCTTGCTTCCTCTTGACCATGACGGCCGACTCTATCGAGGGCATTTTTAAGTCCGTGGAA 20043138 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGT 53449 |||||||| ||||| || | | | || || || || | || | | |||| Sbjct 20043137 CAGTGTGCCTTGATCTCGAAATCGGCCGGCGGCATTGGACTTAACGTCCATTGCATCCGG 20043078 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509 || || ||||| | || || ||||| ||| || |||| | || || ||| | Sbjct 20043077 GCAAAGGGCACCTCGATTTGCGGAACGAATGGCACATCCAATGGCTTGGTTCCCATGTTG 20043018 Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569 | ||||||||||| ||| || || || | || || ||||| ||||| || | Sbjct 20043017 AGGGTCTTCAACAATGTGGCGCGTTATGTGGATCAAGGAGGTGGCAAGCGTCCCGGTGCC 20042958 Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 || ||||| ||||| ||||| |||||| | || | | ||||| || || || | | Sbjct 20042957 TTTGCCATTTACCTGGAGCCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACT---TAAG 20042901 Query 53630 AATCA---GGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCG 53686 || | || | || || | || ||| || |||||| || |||||||| || Sbjct 20042900 AAAAACACCGGCAAGGAGGAAAATCGGGCCCGCGATCTGTTTTACGCCCTGTGGATACCC 20042841 Query 53687 GACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAG 53746 || ||||| ||| | || ||| | | || |||| || |||||||| | | Sbjct 20042840 GATCTCTTTATGAAGCGCGTCGAGGCCAATGGAGATTGGTCGCTAATGTGCCCACATAAA 20042781 Query 53747 TGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCA 53806 ||||| || || || | ||| | || || || || | || ||||| || || | Sbjct 20042780 TGCCCTGGGCTTCACGATGTGTGGGGCGATGAATTCGAAAAGTTGTATGAGAAATATGAG 20042721 Query 53807 GTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAG 53866 |||| || ||| | | || ||||| | | ||| ||| || | | Sbjct 20042720 CAAGAGGGTCGTGCCAACAGAACTGTTAAGGCTCAATCCCTGTGGTTTGCCATTATTGA- 20042662 Query 53867 AGC-CAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAG 53925 ||| ||||| || || |||| || ||||||| | |||||| | |||| |||||| Sbjct 20042661 AGCACAGGTCGAAACTGGAAACCCCTACATGTTGTTTAAGGATGCCTGCAACAGGAAGAG 20042602 Query 53926 CAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 ||||||| |||| ||||| |||||| | ||||| || || Sbjct 20042601 CAACCAGCAGAATGTCGGCACCATCAAGTGTAGCAATTTGTG 20042560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547156627064000