Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1 181 1e-40
>seq1
Length=22559587
Score = 181 bits (200), Expect = 1e-40
Identities = 314/454 (69%), Gaps = 2/454 (0%)
Strand=Plus/Minus
Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211
||||||||||| ||||| ||||| || | ||| | |||||| | || || | ||| ||
Sbjct 4077555 CCAGTTCCGATGCCCTCAGCACCGTTTACCAGCACCATCGGAATGATGGGCAGGTACCAC 4077496
Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271
| ||||| | || | | || |||||| ||| | |||| || || ||| |||
Sbjct 4077495 TGGGGCTCAATCTTCTGGCCATCGTCCACCTGGTAGTCCAGCAGCGGATCGTCCAAGGGA 4077436
Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331
| | | ||| |||| | || | | ||||||||| ||||||| || || |
Sbjct 4077435 TGGTAGATGAGTCGGGTCAAGGGAGACATCAAAGTGAAAATATAACGAGCACTGGCGCAA 4077376
Query 117332 TCCTTGCCACCAG-CAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390
|||||||| || | |||| || |||||||| || || | ||||||| ||| || | ||
Sbjct 4077375 TCCTTGCCGCCCGTCAAG-CGAGTACCGAACTGACCGCGTGGCTCCAGGAGATTTATATT 4077317
Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450
|| ||||||||| |||| || |||| || || || || || || |||||||
Sbjct 4077316 ATTTGCGCCCACATAGTTCTGGGCCAGATTAACGATGGTCATCTGCAGCGAAACCTCACC 4077257
Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510
|||||||| |||| | ||| || ||| | || | |||||| |||||||| | ||
Sbjct 4077256 GTGGTGATAGGCCGACATCTCGGCGACGGAACCAGACAGCTGGGCCACCTTAACCTCACG 4077197
Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570
| | |||| |||||| ||||| | |||||||||||||||| |||||||| || ||
Sbjct 4077196 CTTGTCGTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCTGGCTTCAAGCCGTC 4077137
Query 117571 CGCCACGTGAGGGATCGAACGCTTGATGTCCTCA 117604
| ||| || || ||||||| | ||||| ||
Sbjct 4077136 CACCAGACTGGGAATGGAACGCTCGTTGTCCGCA 4077103
Score = 181 bits (200), Expect = 1e-40
Identities = 316/455 (69%), Gaps = 10/455 (2%)
Strand=Plus/Minus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|| || ||||||||||| |||||||| ||||| | |||||| | || || ||| ||
Sbjct 4077555 CCAGTTCCGATGCCCTCAGCACCGTTTACCAGCACCATCGGAATGATGGGCAGGTACCAC 4077496
Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995
| ||||| | || || || || |||| | ||| | || | | || ||| |||
Sbjct 4077495 TGGGGCTCAATCTTCTGGCCATCGTCCACCTGGTAGTCCAGCAGCGGATCGTCCAAGGGA 4077436
Query 151996 TCGAATATCCGTCGAGTCATAGGAC---TCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052
| | | || |||| |||| ||| ||||| ||||| || || || | |||||
Sbjct 4077435 TGGTAGATGAGTCGGGTCAAGGGAGACATCAAA---GTGAAAATATAACGAGCACTGGCG 4077379
Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112
||||||||| || | || || || || ||||| || ||||| ||||| || |
Sbjct 4077378 CAATCCTTGCCGCCCGTCAAGCGAGTACCGAACTGACCGCGTGGCTCCAGGAGATTTATA 4077319
Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCA 152172
|| || |||||||| | ||||| |||| ||| || || || |||||| | |||
Sbjct 4077318 TTATTTGCGCCCACATAGTTCTGGGCCAGATTAACGATGGTCATCTGCAGCGAAACCTCA 4077259
Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC- 152231
||||||||||| |||| | ||| |||| | | || | || ||| |||||||| | ||
Sbjct 4077258 CCGTGGTGATAGGCCGACATCTCGGCGACGGAACCAGACAGCTGGGCCACCTTAACCTCA 4077199
Query 152232 CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAAC 152290
|| | ||| |||| |||||| |||| | | |||||||||||||| ||| ||||| |
Sbjct 4077198 CGCTTGTC--GTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCTGGCTTCAAGC 4077141
Query 152291 CGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325
||||||||| ||||| ||||||| | |||||
Sbjct 4077140 CGTCCACCAGACTGGGAATGGAACGCTCGTTGTCC 4077106
Score = 114 bits (126), Expect = 1e-20
Identities = 449/702 (64%), Gaps = 8/702 (1%)
Strand=Plus/Minus
Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329
||||| ||||| || ||||||| || || ||||| || |||| ||| ||| |||||
Sbjct 20043257 TACTTCACGCATGCGTCGCCAACACTTTTTGCCGCTGCCACAAATCGCCCGCAGCTGTCG 20043198
Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389
|||||||| || | |||| || ||||| ||||| ||||| | || | | |
Sbjct 20043197 TCTTGCTTCCTCTTGACCATGACGGCCGACTCTATCGAGGGCATTTTTAAGTCCGTGGAA 20043138
Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGT 53449
|||||||| ||||| || | | | || || || || | || | | ||||
Sbjct 20043137 CAGTGTGCCTTGATCTCGAAATCGGCCGGCGGCATTGGACTTAACGTCCATTGCATCCGG 20043078
Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509
|| || ||||| | || || ||||| ||| || |||| | || || ||| |
Sbjct 20043077 GCAAAGGGCACCTCGATTTGCGGAACGAATGGCACATCCAATGGCTTGGTTCCCATGTTG 20043018
Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569
| ||||||||||| ||| || || || | || || ||||| ||||| || |
Sbjct 20043017 AGGGTCTTCAACAATGTGGCGCGTTATGTGGATCAAGGAGGTGGCAAGCGTCCCGGTGCC 20042958
Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629
|| ||||| ||||| ||||| |||||| | || | | ||||| || || || | |
Sbjct 20042957 TTTGCCATTTACCTGGAGCCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACT---TAAG 20042901
Query 53630 AATCA---GGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCG 53686
|| | || | || || | || ||| || |||||| || |||||||| ||
Sbjct 20042900 AAAAACACCGGCAAGGAGGAAAATCGGGCCCGCGATCTGTTTTACGCCCTGTGGATACCC 20042841
Query 53687 GACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAG 53746
|| ||||| ||| | || ||| | | || |||| || |||||||| | |
Sbjct 20042840 GATCTCTTTATGAAGCGCGTCGAGGCCAATGGAGATTGGTCGCTAATGTGCCCACATAAA 20042781
Query 53747 TGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCA 53806
||||| || || || | ||| | || || || || | || ||||| || || |
Sbjct 20042780 TGCCCTGGGCTTCACGATGTGTGGGGCGATGAATTCGAAAAGTTGTATGAGAAATATGAG 20042721
Query 53807 GTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAG 53866
|||| || ||| | | || ||||| | | ||| ||| || | |
Sbjct 20042720 CAAGAGGGTCGTGCCAACAGAACTGTTAAGGCTCAATCCCTGTGGTTTGCCATTATTGA- 20042662
Query 53867 AGC-CAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAG 53925
||| ||||| || || |||| || ||||||| | |||||| | |||| ||||||
Sbjct 20042661 AGCACAGGTCGAAACTGGAAACCCCTACATGTTGTTTAAGGATGCCTGCAACAGGAAGAG 20042602
Query 53926 CAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967
||||||| |||| ||||| |||||| | ||||| || ||
Sbjct 20042601 CAACCAGCAGAATGTCGGCACCATCAAGTGTAGCAATTTGTG 20042560
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547156627064000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |