Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq1 205 8e-48
>seq1
Length=22559587
Score = 205 bits (226), Expect = 8e-48
Identities = 416/609 (68%), Gaps = 13/609 (2%)
Strand=Plus/Minus
Query 29860 CTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTT 29919
||| ||||| ||||||||| ||||| | | |||||||| ||| | ||| |||| | |
Sbjct 6128270 CTCCAGCTGCTCCTTCAGCGGCTCCACATGGTTCAGGTAGATGTGCGTGTCGCCCATGGT 6128211
Query 29920 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29979
||| ||||| ||||| || | || || || || || || ||||||| ||||| || |
Sbjct 6128210 GTGCACAAAGTCTCCGGGCTTCAGACCCGTCACATGGGCGATCATGTGGGTGAGCAGGGC 6128151
Query 29980 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 30039
|||| ||||||||| ||||| || || || |||||||| | ||||||||| |||||
Sbjct 6128150 GTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCTCTGGTACAGCTG 6128091
Query 30040 ACACGAGAGCTCTCCGT-CG-CTC----ACGTAAAACTGACACATGGCGTGGCACGGAGG 30093
|| || ||||| ||| || ||| ||||| ||||| || | |||||| |||||
Sbjct 6128090 GCAGGAAAGCTCACCGCGCGTCTCTGAGACGTAGAACTGTGCCAGGCAGTGGCATGGAGG 6128031
Query 30094 AAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTC 30153
||| ||||| | ||| || ||||| || ||| |||||||||||||||
Sbjct 6128030 AAGGGCCATCTTTGGTATGTCCAGTGGATTCCATGCCGACATGATGATGCGCCTGTCCGA 6127971
Query 30154 TGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 30213
|| || ||| ||||| || | | | ||||||| || | ||| | || |||
Sbjct 6127970 AGGATTATTCTTGATGGTCTCGATCACCTGGCGCAGCTGGTCGATGCCCTTGCCGTTGTA 6127911
Query 30214 GTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCG 30272
|| | | ||| | | |||||| || || ||||| | ||||||||| ||||| ||||
Sbjct 6127910 ATCGTCGTCGCATTTGC-CGTACTCCGCCCCAAAATGACGCCACTGGAAGCCGTATACCG 6127852
Query 30273 GTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAAC 30332
| |||||||| || | | | | | | ||| |||||||| || || |||| |
Sbjct 6127851 GGCCCAGGTCGCCGACGGCGCGCTCCGTGTGCCCCAGCTTGTCCAGGAACTCCCTGGTGC 6127792
Query 30333 CGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTC 30392
||| |||||||||| | || ||| || ||| |||| || || |||
Sbjct 6127791 TGTTCTCGTCCCAGATGTGCACGTTCTTATCCTGCAGCAGCTTGGCGTCCGTCTTGCCTG 6127732
Query 30393 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAG 30450
|||||||| ||||||||||| | || || | || ||||| | |||||| || ||
Sbjct 6127731 CCACGAACCAGAGCAGCTCCTCGGCCAC--CCCGCGAAAGAAGACGCGCTTGGTGGTCAG 6127674
Query 30451 GAG-GGGAA 30458
|| |||||
Sbjct 6127673 CAGCGGGAA 6127665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406267417438560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |