Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1 205 8e-48 >seq1 Length=22559587 Score = 205 bits (226), Expect = 8e-48 Identities = 416/609 (68%), Gaps = 13/609 (2%) Strand=Plus/Minus Query 29860 CTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTT 29919 ||| ||||| ||||||||| ||||| | | |||||||| ||| | ||| |||| | | Sbjct 6128270 CTCCAGCTGCTCCTTCAGCGGCTCCACATGGTTCAGGTAGATGTGCGTGTCGCCCATGGT 6128211 Query 29920 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29979 ||| ||||| ||||| || | || || || || || || ||||||| ||||| || | Sbjct 6128210 GTGCACAAAGTCTCCGGGCTTCAGACCCGTCACATGGGCGATCATGTGGGTGAGCAGGGC 6128151 Query 29980 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 30039 |||| ||||||||| ||||| || || || |||||||| | ||||||||| ||||| Sbjct 6128150 GTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCTCTGGTACAGCTG 6128091 Query 30040 ACACGAGAGCTCTCCGT-CG-CTC----ACGTAAAACTGACACATGGCGTGGCACGGAGG 30093 || || ||||| ||| || ||| ||||| ||||| || | |||||| ||||| Sbjct 6128090 GCAGGAAAGCTCACCGCGCGTCTCTGAGACGTAGAACTGTGCCAGGCAGTGGCATGGAGG 6128031 Query 30094 AAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTC 30153 ||| ||||| | ||| || ||||| || ||| ||||||||||||||| Sbjct 6128030 AAGGGCCATCTTTGGTATGTCCAGTGGATTCCATGCCGACATGATGATGCGCCTGTCCGA 6127971 Query 30154 TGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 30213 || || ||| ||||| || | | | ||||||| || | ||| | || ||| Sbjct 6127970 AGGATTATTCTTGATGGTCTCGATCACCTGGCGCAGCTGGTCGATGCCCTTGCCGTTGTA 6127911 Query 30214 GTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCG 30272 || | | ||| | | |||||| || || ||||| | ||||||||| ||||| |||| Sbjct 6127910 ATCGTCGTCGCATTTGC-CGTACTCCGCCCCAAAATGACGCCACTGGAAGCCGTATACCG 6127852 Query 30273 GTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAAC 30332 | |||||||| || | | | | | | ||| |||||||| || || |||| | Sbjct 6127851 GGCCCAGGTCGCCGACGGCGCGCTCCGTGTGCCCCAGCTTGTCCAGGAACTCCCTGGTGC 6127792 Query 30333 CGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTC 30392 ||| |||||||||| | || ||| || ||| |||| || || ||| Sbjct 6127791 TGTTCTCGTCCCAGATGTGCACGTTCTTATCCTGCAGCAGCTTGGCGTCCGTCTTGCCTG 6127732 Query 30393 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAG 30450 |||||||| ||||||||||| | || || | || ||||| | |||||| || || Sbjct 6127731 CCACGAACCAGAGCAGCTCCTCGGCCAC--CCCGCGAAAGAAGACGCGCTTGGTGGTCAG 6127674 Query 30451 GAG-GGGAA 30458 || ||||| Sbjct 6127673 CAGCGGGAA 6127665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406267417438560