Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4812 104 1e-17 seq3325 100 2e-16 >seq4812 Length=908733 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | || |||||| |||||||| ||||| || | || || Sbjct 620068 AGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGACAAAGTGCGA 620127 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || ||||| || || | |||||| || || || || | |||||| Sbjct 620128 CCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATACCCTCC 620187 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | ||| ||| | ||| |||||| |||||| |||| ||| Sbjct 620188 TTGTCTTGGATC-TTGGCTTTGACGTTTTCAATGGTGTCTGAAGGCTCCACCTCCAGGGT 620246 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | ||||| || || |||||||| Sbjct 620247 GATGGTCTTGCCAGTAAGAGTTTTGACGAAGATCTGCAT 620285 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| || || || || || || |||| || ||||| || ||||| || Sbjct 619866 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCCTCCAGTTGCTTGCCGGCGAA 619925 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG- 34633 || | |||||| ||||| || || | ||||||||||||| |||| || | || ||| Sbjct 619926 GATGAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGGATC-TTGGCCTTGACGT 619984 Query 34634 ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| || || ||| ||||||| || || || || ||||| || || |||| Sbjct 619985 TTTCAATGGTATCAGAAGGCTCGACTTCCAGAGTAATGGTCTTTCCGGTCAAAGTCTTCA 620044 Query 34694 CAAAAATCTGCAT 34706 | || || ||||| Sbjct 620045 CGAAGATTTGCAT 620057 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| || |||||| || ||||| || || || || || || Sbjct 620296 AGACGGAGTACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 620355 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || |||||||| ||||| || || | |||||| || || || || | |||||| Sbjct 620356 CCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCC 620415 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | ||| ||||| |||||| |||| ||| Sbjct 620416 TTGTCTTGGATC-TTGGCCTTGACGTTTTCAATGGTGTCCGAAGGCTCCACCTCCAGGGT 620474 Query 34668 TATCGTTTTACCGGTTAACGTTTTC 34692 || || || || || | |||||| Sbjct 620475 GATGGTCTTGCCAGTAAGAGTTTTC 620499 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||||||||| || | || || |||| ||||| || || ||||| || Sbjct 620502 CTCCTTCTGGATGTTATAATCGGACAAAGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAA 620561 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG- 34633 || | |||||| || || || || | |||||||||||| ||| ||| | || ||| Sbjct 620562 GATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGAT-TTTGGCCTTTACGT 620620 Query 34634 ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| ||||| |||||| |||| ||| || || || || || | ||||| | Sbjct 620621 TTTCAATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTGA 620680 Query 34694 CAAAAATCTGCAT 34706 | || |||||||| Sbjct 620681 CGAAGATCTGCAT 620693 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| || |||||| || ||||| ||||| || | || || Sbjct 620704 AGACGGAGTACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGACAAAGTGCGA 620763 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || ||||| || || || |||||||| || || || | ||||||| Sbjct 620764 CCGTCCTCAAGCTGCTTTCCGGCGAAGATCAATCGCTGTTGATCTGGGGGGATTCCCTCC 620823 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 620824 TTGTCCTGGATCTT 620837 >seq3325 Length=21082 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| || |||||| || ||||| || || || || || || Sbjct 20516 AGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 20457 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || |||||||| ||||| || || | |||||| || || || || | |||||| Sbjct 20456 CCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCC 20397 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || ||| | ||| ||||| ||| ||||| | || Sbjct 20396 TTGTCCTGGAT-TTTAGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTACTTCAAGAGT 20338 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| || || || || ||||||||||| Sbjct 20337 GATGGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 20299 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | ||| ||||| || ||||| ||||| || || || || Sbjct 20744 AGACGGAGAACCAAATGCAAAGTCGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGT 20685 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || |||||||| ||||| || || || ||||| || || || || | |||||| Sbjct 20684 CCGTCCTCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGGATGCCCTCC 20625 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 ||||| |||||| || | | ||| |||||| ||| ||||||| ||| Sbjct 20624 TTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCTGATGGCTCAACTTCCAAGGTG 20565 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || ||||| |||||||| Sbjct 20564 ATGGTCTTGCCAGTAAGTGTCTTGACAAAGATCTGCAT 20527 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || | || |||||| |||||||| ||||| || || || || Sbjct 20288 AGACGGAGAACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGA 20229 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || ||||| || || | |||||| || || || || | |||||| Sbjct 20228 CCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCCTCC 20169 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | ||| ||||| ||||| |||| ||| Sbjct 20168 TTGTCTTGGATC-TTAGCCTTGACGTTTTCAATGGTGTCCGAAGGTTCCACCTCCAGGGT 20110 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | ||||| ||||| |||||||| Sbjct 20109 GATGGTCTTGCCAGTAAGAGTTTTGACAAAGATCTGCAT 20071 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/226 (69%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || || ||| |||||| || ||||| ||||| || | || || Sbjct 21058 AGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTGCGA 20999 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| || || || || | ||||||| Sbjct 20998 CCATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCCCTCC 20939 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC--TTCGCT-----CTCCACTT 34660 ||||| ||| ||| | || ||| | ||| ||||| ||| |||||| | Sbjct 20938 TTGTCCTGGAT-TTTCGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTTGGCTCCACCT 20880 Query 34661 CCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | | || || || || ||||| || || || || ||||||||||| Sbjct 20879 CAAGAGTGATTGTCTTTCCGGTCAAAGTCTTTACGAAAATCTGCAT 20834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314696305542440