Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3325 172 5e-38 seq4812 163 2e-35 seq4563 154 1e-32 seq1 140 3e-28 >seq3325 Length=21082 Score = 172 bits (190), Expect = 5e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| || |||||| | || || || || |||||||| || Sbjct 20071 ATGCAGATCTTTGTCAAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAACCTTCG 20130 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || |||||||| || ||||| || || ||||| Sbjct 20131 GACACCATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCCCCAGATCAG 20190 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || | || || || ||| | |||||||||||| Sbjct 20191 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTGTCCGATTACAAC 20250 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||||||||| || |||||| | ||| |||| ||||| || Sbjct 20251 ATTCAGAAGGAGTCGACCTTGCACTTGGTTCTCCGTCTGCGTGGTGGTAT 20300 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || ||| | |||||| | || ||||| || ||| Sbjct 19387 ATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATTACTTTGGAGGTGGAGCCCTCC 19446 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| || || ||||| || || || || ||||| || || ||||| Sbjct 19447 GATACGATTGAGAATGTGAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCAGATCAG 19506 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||||||| |||| ||| | ||| | ||||| |||||| Sbjct 19507 CAGCGTCTTATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGACTACAAC 19566 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| | ||| |||| ||||| || Sbjct 19567 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTGCGCGGTGGAAT 19616 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| ||||||| ||| | || ||||||||||| || || || Sbjct 20299 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTAGAGCCTTCG 20358 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||||| || ||||| || ||||| || || ||||| Sbjct 20359 GACACTATTGAAAACGTAAAGGCTAAAATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 20418 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||||||| |||| ||| | ||| | ||||| |||||| Sbjct 20419 CAGCGTCTTATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGACTACAAC 20478 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| | ||| | || ||||| || Sbjct 20479 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTCCGCGGTGGAAT 20528 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || | ||||| || || || Sbjct 20527 ATGCAGATCTTTGTCAAGACACTTACTGGCAAGACCATCACCTTGGAAGTTGAGCCATCA 20586 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| || ||||| || || ||||| Sbjct 20587 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 20646 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||||||||||||| |||| ||| | ||| | |||||||||||| Sbjct 20647 CAGCGATTGATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGATTACAAC 20706 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| ||||| || ||||||||| | ||| |||| ||||| || Sbjct 20707 ATCCAGAAGGAATCGACTTTGCATTTGGTTCTCCGTCTGCGTGGTGGTAT 20756 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||||||||| | || ||||||||||| || || || Sbjct 19615 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTCT 19674 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || || || || ||||| || || || || || ||||| Sbjct 19675 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 19734 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || |||| || || || | || ||||||||| Sbjct 19735 CAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACAAC 19794 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || ||||| | ||| | || ||||| || Sbjct 19795 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGTCTACGCGGTGGAAT 19844 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||||||||| | || ||||||||||| || || || Sbjct 19843 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTCT 19902 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || || || || ||||| || || || || || ||||| Sbjct 19903 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 19962 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || |||| || || || | || ||||||||| Sbjct 19963 CAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACAAC 20022 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || ||||| | ||| | || ||||| || Sbjct 20023 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGTCTACGCGGTGGAAT 20072 Score = 118 bits (130), Expect = 9e-22 Identities = 168/237 (71%), Gaps = 7/237 (3%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG--- 27044 |||||||| || ||||| ||| ||||||| ||| | || |||||||| ||||| || Sbjct 20834 ATGCAGATTTTCGTAAAGACTTTGACCGGAAAGACAATCACTCTTGAGGTGGAGCCAAGA 20893 Query 27045 ----TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACC 27100 || ||| | ||||| | || || ||||| || ||||| || || || || || Sbjct 20894 GCCTTCGGACACTATTGAAAACGTAAAGGCGAAAATCCAGGACAAGGAGGGAATCCCCCC 20953 Query 27101 CGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGA 27160 ||||| |||||| | || | |||||| || || |||| || || || | || || Sbjct 20954 AGATCAGCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGA 21013 Query 27161 TTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| || |||||||| ||| | || ||||| | ||| | || ||||| || Sbjct 21014 TTACAACATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGTCTACGCGGTGGAAT 21070 >seq4812 Length=908733 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||| || |||||| | || || || || ||||| || || Sbjct 620285 ATGCAGATCTTCGTCAAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTCA 620226 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || || |||||||| || || || || || ||||| Sbjct 620225 GACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 620166 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || | || || || || | |||||||||||| Sbjct 620165 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCCGATTACAAC 620106 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||||||||| ||||||||| | ||| |||| ||||| || Sbjct 620105 ATTCAGAAGGAGTCGACCTTGCATTTGGTTCTCCGTCTGCGTGGTGGTAT 620056 Score = 145 bits (160), Expect = 7e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27003 AAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATG 27062 |||||||| || |||||| | || || || || ||||| || || ||| | ||||| | Sbjct 620498 AAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTCGGACACCATTGAAAAC 620439 Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122 ||||| || || |||||||| || || || || || ||||| |||||| | || | | Sbjct 620438 GTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAGCGTCTTATCTTC 620379 Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 |||||||||||| |||| ||| | ||| | ||||| |||||||| || ||||||||| Sbjct 620378 GCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCG 620319 Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| | || ||||| | ||| |||| ||||| || Sbjct 620318 ACCCTCCACTTGGTACTCCGTCTGCGCGGTGGAAT 620284 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| ||||||| ||| | |||||||| ||||| || || || Sbjct 620057 ATGCAAATCTTCGTGAAGACTTTGACCGGAAAGACCATTACTCTGGAAGTCGAGCCTTCT 619998 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || || |||||||| || || || || || || || Sbjct 619997 GATACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAG 619938 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| ||| |||| ||| | ||| | || || |||||| Sbjct 619937 CAGCGTCTCATCTTCGCCGGCAAGCAACTGGAGGACGGACGCACCCTGTCTGACTACAAC 619878 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || |||||||||||| Sbjct 619877 ATCCAGAAGGAGTCGACC 619860 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| || || || || || ||||||||||| || || | |||||| || Sbjct 620837 AAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAACAGCGATTGATCTTCGCCGGAAAG 620778 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| || || | || ||||||||||| || |||||||||||| | || Sbjct 620777 CAGCTTGAGGACGGTCGCACTTTGTCTGATTACAACATCCAGAAGGAGTCGACCCTCCAC 620718 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | ||| |||| ||||| || Sbjct 620717 TTGGTACTCCGTCTGCGCGGTGGAAT 620692 >seq4563 Length=14502029 Score = 154 bits (170), Expect = 1e-32 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 135474 TGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCA 135533 |||||||| |||| |||| |||||| ||| || ||||||||||| || ||| |||||| Sbjct 8077024 TGTGGAACTCGGCGCAACTGCAGCTGGTGCGCGAGGGCAAAATGCATGGCTTTCTGCGCA 8076965 Query 135534 TGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACG 135593 |||| ||||| || ||||| | || ||| | || | |||| ||||| || || | | Sbjct 8076964 TGTACTGGGCCAAGAAGATTCTCGAGTGGACCGCCACCCCTGAGGAGGCACTGGAATATG 8076905 Query 135594 CAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTT 135653 | || | | ||||| | ||||| | |||||||||||| | ||||| || || || | Sbjct 8076904 CGATTCTCCTGAATGACAAGTACAGCCTCGATGGACGCGATCCCAATGGATATGTCGGCT 8076845 Query 135654 GTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCA 135713 | |||||||| ||| | || | ||||| || ||||||||||| | || |||| Sbjct 8076844 GCATGTGGTCCATTGGGGGAATCCACGACATGGGCTGGAAGGAGCGGGCCATTTTCGGCA 8076785 Query 135714 AGATTCGCTATATGAACTATGACGGTTG 135741 || |||| || ||||||||| | || || Sbjct 8076784 AGGTTCGATACATGAACTATCAGGGGTG 8076757 >seq1 Length=22559587 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || |||||||| || ||||| || Sbjct 20155321 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCTTCG 20155380 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| ||||||||||| || || || ||||| Sbjct 20155381 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 20155440 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || ||||||| | ||| | || || || ||| Sbjct 20155441 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 20155500 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || || || ||||| |||| |||| ||||| Sbjct 20155501 ATTCAGAAGGAGTCCACTTTGCACTTGGTGCTGCGCCTGCGTGGTGG 20155547 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || || || ||||| || ||||||||| | || || | || ||||| || | Sbjct 1137173 CCATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTT 1137114 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | || |||| || || || || || ||||| || || || || || |||| Sbjct 1137113 CGGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATC 1137054 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||| | || | ||||||||| || |||| ||| | ||| | ||||| |||| Sbjct 1137053 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGAACCCTGTCCGACTACA 1136994 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||||||| | || |||| | || |||| ||||| || Sbjct 1136993 ACATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGCCTGCGCGGTGGTAT 1136942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434871211353600