Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 219 4e-52 >seq1 Length=22559587 Score = 219 bits (242), Expect = 4e-52 Identities = 463/686 (67%), Gaps = 10/686 (1%) Strand=Plus/Plus Query 34168 GGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAATTTCCGCT 34227 ||| || || ||| ||||||||| ||| || | |||| | || | | || ||||| Sbjct 6127613 GGGAACGCTGTCCCTGTTCGGCAGCCAGATGCGCTTCAACATGCGCGACTCCTTCCCGCT 6127672 Query 34228 GCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAG 34287 |||||| || || || || | || || |||| |||||||||||| ||||||||| Sbjct 6127673 GCTGACCACCAAGCGCGTCTTCTTTCGCGGGGTGGCCGAGGAGCTGCTCTGGTTCGTGGC 6127732 Query 34288 GGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGG 34347 || ||| || ||||| ||| | | ||| | |||||||||| || | Sbjct 6127733 AGGCAAGACGGACGCCAAGCTGCTGCAGGATAAGAACGTGCACATCTGGGACGAGAACAG 6127792 Query 34348 GTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCC 34407 | | || || |||||||||| |||| | | || | | |||||| ||||||| Sbjct 6127793 CACCAGGGAGTTCCTGGACAAGCTGGGGCACACGGAGCGCGCCGTCGGCGACCTGGGCCC 6127852 Query 34408 GGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGA-GCGAAGCGGACT 34466 ||| ||||| ||||||||| | || |||||||||||||| ||| | |||| | || | Sbjct 6127853 GGTATACGGCTTCCAGTGGCGTCATTTTGGGGCGGAGTA-CGGCAAATGCGACGACGATT 6127911 Query 34467 ATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTG 34526 | || |||| |||||||||| | |||||||| ||| | ||| || ||| Sbjct 6127912 ACAACGGCAAGGGCATCGACCAGCTGCGCCAGGTGATCGAGACCATCAAGAATAATCCTT 6127971 Query 34527 ATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCC 34586 ||||| | ||| | |||| || ||||| || ||| | || |||||| || | Sbjct 6127972 CGGACAGGCGCATCATCATGTCGGCATGGAATCCACTGGACATACCAAAGATGGCCCTTC 6128031 Query 34587 CCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT------GGGGAGCTGTCCTGCC 34640 | || |||||| ||| || ||||||||| | | || ||||| ||||||| Sbjct 6128032 CTCCATGCCACTGCCTGGCACAGTTCTACGTCTCAGAGACGCGCGGTGAGCTTTCCTGCC 6128091 Query 34641 AGCTCTATCA-ACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTAC 34699 |||| || || | || | | |||||||| | || ||||| |||||||| || ||| Sbjct 6128092 AGCTGTACCAGAGGAGC-GCCGACATGGGCCTGGGCGTGCCCTTCAACATCGCCTCCTAC 6128150 Query 34700 GCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCAT 34759 || |||||||| |||||||||| ||||| ||| || || || || | ||||| Sbjct 6128151 GCCCTGCTCACCCACATGATCGCCCATGTGACGGGTCTGAAGCCCGGAGACTTTGTGCAC 6128210 Query 34760 ACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAA 34819 || |||| || |||| |||||||||||||| | |||| ||| | |||||| | Sbjct 6128211 ACCATGGGCGACACGCACATCTACCTGAACCATGTGGAGCCGCTGAAGGAGCAGCTGGAG 6128270 Query 34820 CGAGAGCCCCGACCGTTCCCCCAGCT 34845 || ||| || || ||||| |||| Sbjct 6128271 CGCACGCCGCGTCCCTTCCCTAAGCT 6128296 Score = 219 bits (242), Expect = 4e-52 Identities = 463/686 (67%), Gaps = 10/686 (1%) Strand=Plus/Minus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 |||| ||||| || || ||| || | |||||| | ||| |||| | |||||| Sbjct 6128296 AGCTTAGGGAAGGGACGCGGCGTGCGCTCCAGCTGCTCCTTCAGCGGCTCCACATGGTTC 6128237 Query 6560 AGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACA 6619 |||||||| |||| || |||| || ||||| | || || || || ||| ||| Sbjct 6128236 AGGTAGATGTGCGTGTCGCCCATGGTGTGCACAAAGTCTCCGGGCTTCAGACCCGTCACA 6128177 Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || |||||||||| |||||||| ||||| || |||||||| ||||| || | ||| Sbjct 6128176 TGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCC 6128117 Query 6680 ATGTCTCCCGATCGT-TGATAGAGCTGGCAGGACAGCTCCCC------ATTCGCGACGTA 6732 ||||| | | || | || || ||||||||||| ||||| || | | |||||| Sbjct 6128116 ATGTCGGC-GCTCCTCTGGTACAGCTGGCAGGAAAGCTCACCGCGCGTCTCTGAGACGTA 6128058 Query 6733 GAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCA 6792 ||| || ||| |||||| || || || |||||| || | ||| || ||||| Sbjct 6128057 GAACTGTGCCAGGCAGTGGCATGGAGGAAGGGCCATCTTTGGTATGTCCAGTGGATTCCA 6127998 Query 6793 CGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTG 6852 || |||| | ||| | ||||| ||| || ||| | ||| |||||||| | | Sbjct 6127997 TGCCGACATGATGATGCGCCTGTCCGAAGGATTATTCTTGATGGTCTCGATCACCTGGCG 6127938 Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGC-TCCCCCGATACTCCGCCCCAA 6911 ||||||||| |||| || || || | |||| | ||| ||||||||||||| Sbjct 6127937 CAGCTGGTCGATGCCCTTGCCGTTGTAATCGTCGTCGCATTTGCCG-TACTCCGCCCCAA 6127879 Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACC 6971 | || | ||||||||| ||||| |||||||||| |||||| | | || | | || Sbjct 6127878 AATGACGCCACTGGAAGCCGTATACCGGGCCCAGGTCGCCGACGGCGCGCTCCGTGTGCC 6127819 Query 6972 CCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACG 7031 || |||||||||| || || | | | || |||||||||| | ||| | | Sbjct 6127818 CCAGCTTGTCCAGGAACTCCCTGGTGCTGTTCTCGTCCCAGATGTGCACGTTCTTATCCT 6127759 Query 7032 AGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCT 7091 ||| ||||| || ||| || ||||||||| |||||||||||| |||| || Sbjct 6127758 GCAGCAGCTTGGCGTCCGTCTTGCCTGCCACGAACCAGAGCAGCTCCTCGGCCACCCCGC 6127699 Query 7092 TCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCT 7151 || | || || || || ||||||||||| || | | || | |||| | || || Sbjct 6127698 GAAAGAAGACGCGCTTGGTGGTCAGCAGCGGGAAGGAGTCGCGCATGTTGAAGCGCATCT 6127639 Query 7152 GTGTGCCGAACACGGAGAGGGTCCCC 7177 | ||||||||| ||| || || ||| Sbjct 6127638 GGCTGCCGAACAGGGACAGCGTTCCC 6127613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448213763529600