Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3325 105 5e-18 seq2 105 5e-18 seq4812 84.2 2e-11 >seq3325 Length=21082 Score = 105 bits (116), Expect = 5e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || ||||| |||||| |||| |||| ||||| | |||||||| Sbjct 20641 GATCAGCAGCGATTGATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGAT 20700 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || || ||||||||||||||| | ||| ||||||| || Sbjct 20701 TACAACATCCAGAAGGAATCGACTTTGCATTTGGTTCTCCGTCTGCGTGGTGG 20753 >seq2 Length=2985096 Score = 105 bits (116), Expect = 5e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || |||||||| || ||||| Sbjct 124060 GACAAGGAGGGCATTCCCCCAGACCAGCAGCGTTTGATCTTCGCCGGAAAGCAGTTGGAG 124119 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| |||||||| ||||| ||||| || ||| |||||||||||||| || Sbjct 124120 GACGGACGCACTTTGTCCGACTACAATATCCAGAAGGAGTCTACTTTGCATTTGGTCCTG 124179 Query 28003 CGTTTGCGTGGCGGCG 28018 ||| ||||||| |||| Sbjct 124180 CGTCTGCGTGGTGGCG 124195 >seq4812 Length=908733 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || ||| |||| || ||||| || | || || |||||||| || | || Sbjct 620192 GACAAGGAGGGTATTCCCCCAGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAG 620133 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||||||||||||||| || || ||| || |||||||||||| | Sbjct 620132 GATGGTCGCACTTTGTCCGATTACAACATTCAGAAGGAGTCGACCTTGCATTTGGTTCTC 620073 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 620072 CGTCTGCGTGGTGG 620059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355824754206360