Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq3325 105 5e-18
seq2 105 5e-18
seq4812 84.2 2e-11
>seq3325
Length=21082
Score = 105 bits (116), Expect = 5e-18
Identities = 91/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| ||||| || || || || ||||| |||||| |||| |||| ||||| | ||||||||
Sbjct 20641 GATCAGCAGCGATTGATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGAT 20700
Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||||||| || || ||||||||||||||| | ||| ||||||| ||
Sbjct 20701 TACAACATCCAGAAGGAATCGACTTTGCATTTGGTTCTCCGTCTGCGTGGTGG 20753
>seq2
Length=2985096
Score = 105 bits (116), Expect = 5e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || || |||| || ||||| || || || || |||||||| || |||||
Sbjct 124060 GACAAGGAGGGCATTCCCCCAGACCAGCAGCGTTTGATCTTCGCCGGAAAGCAGTTGGAG 124119
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||||| |||||||| ||||| ||||| || ||| |||||||||||||| ||
Sbjct 124120 GACGGACGCACTTTGTCCGACTACAATATCCAGAAGGAGTCTACTTTGCATTTGGTCCTG 124179
Query 28003 CGTTTGCGTGGCGGCG 28018
||| ||||||| ||||
Sbjct 124180 CGTCTGCGTGGTGGCG 124195
>seq4812
Length=908733
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || ||| |||| || ||||| || | || || |||||||| || | ||
Sbjct 620192 GACAAGGAGGGTATTCCCCCAGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAG 620133
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | |||| ||||||||||||||||| || || ||| || |||||||||||| |
Sbjct 620132 GATGGTCGCACTTTGTCCGATTACAACATTCAGAAGGAGTCGACCTTGCATTTGGTTCTC 620073
Query 28003 CGTTTGCGTGGCGG 28016
||| ||||||| ||
Sbjct 620072 CGTCTGCGTGGTGG 620059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355824754206360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |