Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq3325 104 2e-17
seq2 87.8 2e-12
seq1 84.2 2e-11
>seq3325
Length=21082
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || || || ||| || || || || || |||| || || ||| |||| ||
Sbjct 19595 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 19536
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
|| |||||||| || || |||||||||||||| || | ||| | || ||| || ||| |
Sbjct 19535 AGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTATCCTGG 19476
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
||||| || | || | | ||||||| | |||||| |||| || || | |||
Sbjct 19475 ATTTTGGCCTTCACATTCTCAATCGTATCGGAGGGCTCCACCTCCAAAGTAATGGTCTTT 19416
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
|| |||| || || |||||||| ||||| ||
Sbjct 19415 CCAGTCAAGGTCTTCACAAAGATCTGCATTTT 19384
Score = 82.4 bits (90), Expect = 7e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || || || ||| || || || || || |||| || || ||| |||| ||
Sbjct 20507 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 20448
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
|| |||||||| || || |||||||||||||| || | ||| | || ||| |||||| |
Sbjct 20447 AGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGG 20388
Query 39196 ATTTT 39200
|||||
Sbjct 20387 ATTTT 20383
>seq2
Length=2985096
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || ||| ||| || || || || || |||| | || ||| | || ||
Sbjct 123948 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGTCCATCCTC 123889
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
| ||| || || || || || |||||||||||||| | ||| | || ||| ||||||
Sbjct 123888 CAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 123829
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | |||||| | ||| || |||| ||||| | ||
Sbjct 123828 GATCTTGGCCTTAACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTT 123769
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
|| ||||| ||||| || || |||||||| ||
Sbjct 123768 GCCAGTCAGGGTTTTCACGAAAATTTGCATGTT 123736
>seq1
Length=22559587
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || || || ||| || || || || || |||| || ||||| |
Sbjct 1136956 GCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCC 1137015
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
||| || ||||| ||||| || || || ||||||||||| || | ||| | | ||| ||
Sbjct 1137016 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTT 1137075
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
|||| ||| || || | || | | || || | |||||| |||| |||||
Sbjct 1137076 GTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGAT 1137135
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || || || || ||||| || |||||||||||
Sbjct 1137136 GGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 1137171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429500159444840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |