Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3325 134 9e-27 seq1 122 6e-23 seq4812 114 9e-21 >seq3325 Length=21082 Score = 134 bits (148), Expect = 9e-27 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || ||||| || |||||||| ||||| || | || Sbjct 20299 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTAGAGCCTTCG 20358 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| |||| ||||| ||||| || || | || |||||||| Sbjct 20359 GACACTATTGAAAACGTAAAGGCTAAAATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 20418 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||||||||||||||| |||| |||||| | ||| |||||| Sbjct 20419 CAGCGTCTTATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGACTACAAC 20478 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 20479 ATCCAGAAGGAGTCGAC 20495 Score = 114 bits (126), Expect = 9e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || || || || || || ||||| | |||||||| | | Sbjct 20526 AATGCAGATCTTTGTCAAGACACTTACTGGCAAGACCATCACCTTGGAAGTTGAGCCATC 20585 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | || || || ||||| || || | || |||||||| Sbjct 20586 AGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCA 20645 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || || ||||||||||||||||| |||| |||||| | ||||||||| Sbjct 20646 GCAGCGATTGATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGATTACAA 20705 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || || || || || ||||| ||| Sbjct 20706 CATCCAGAAGGAATCGACTTTGCATTTGGTT 20736 Score = 109 bits (120), Expect = 4e-19 Identities = 146/204 (72%), Gaps = 7/204 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA-- 23668 |||||||||||||| || || | || ||||| || |||||||| || || || | | Sbjct 20834 ATGCAGATTTTCGTAAAGACTTTGACCGGAAAGACAATCACTCTTGAGGTGGAGCCAAGA 20893 Query 23669 -----CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 |||||||| |||||| |||| ||||| ||||| || || | || || Sbjct 20894 GCCTTCGGACACTATTGAAAACGTAAAGGCGAAAATCCAGGACAAGGAGGGAATCCCCCC 20953 Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783 |||||| |||||| | || || ||||| || || ||||| || | |||||||| || Sbjct 20954 AGATCAGCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGA 21013 Query 23784 TTACAACATACAAAAAGAGTCCAC 23807 ||||||||| || || |||||||| Sbjct 21014 TTACAACATCCAGAAGGAGTCCAC 21037 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||| | || ||||| || || ||| | || || || || Sbjct 19384 AAAATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATTACTTTGGAGGTGGAGCCC 19443 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||| ||| | || | ||||| || || || || | || ||||| Sbjct 19444 TCCGATACGATTGAGAATGTGAAGGC-CAAAATCCAGGATAAGGAGGGCATCCCCCCAGA 19502 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || ||||||||||||||||| |||| |||||| | ||| || Sbjct 19503 TCAGCAGCGTCTTATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGACTA 19562 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 19563 CAACATCCAGAAGGAGTCGAC 19583 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || | || || ||||| |||||||| |||||||| | | Sbjct 19614 AATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTC 19673 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | || ||| | || | || | | ||||| || || | || ||||||| Sbjct 19674 TGATACCATCGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGAATCCCCCCAGATC 19732 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || || ||||| || || ||||| || | |||||||| ||||||| Sbjct 19733 AGCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACA 19792 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || |||||||| Sbjct 19793 ACATCCAGAAGGAGTCCAC 19811 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || | || || ||||| |||||||| |||||||| | | Sbjct 19842 AATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTC 19901 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | || ||| | || | || | | ||||| || || | || ||||||| Sbjct 19902 TGATACCATCGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGAATCCCCCCAGATC 19960 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || || ||||| || || ||||| || | |||||||| ||||||| Sbjct 19961 AGCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACA 20020 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || |||||||| Sbjct 20021 ACATCCAGAAGGAGTCCAC 20039 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || ||||| || || || || || ||||| || || || || | | Sbjct 20070 AATGCAGATCTTTGTCAAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAACCTTC 20129 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | || || || ||||| || || | || |||||||| Sbjct 20130 GGACACCATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCCCCAGATCA 20189 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || || || || | ||||| | ||||||||| Sbjct 20190 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTGTCCGATTACAA 20249 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || || || || ||| Sbjct 20250 CATTCAGAAGGAGTCGACCTTGCACTTGGTT 20280 >seq1 Length=22559587 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||||||||| || || |||||||| || || || | Sbjct 20155318 AAGATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCT 20155377 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| ||| | |||| | ||| || ||| ||||||||||| | || |||||| Sbjct 20155378 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 20155437 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || || ||||| || |||||||| | ||||| | || || Sbjct 20155438 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 20155497 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || || |||||||| || || || || Sbjct 20155498 AACATTCAGAAGGAGTCCACTTTGCACTTGGT 20155529 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||||||||| || || || ||||| | || || || | || Sbjct 1137171 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 1137112 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || || | || |||||||| Sbjct 1137111 GACACCATCGAGAATGTGAAGGC-CAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 1137053 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || ||||| |||| || || | ||| ||||| Sbjct 1137052 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGAACCCTGTCCGACTACAA 1136993 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 1136992 CATCCAGAAGGAGTCGAC 1136975 >seq4812 Length=908733 Score = 114 bits (126), Expect = 9e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| ||||| || || || || || ||||| || || || || | | Sbjct 620286 AATGCAGATCTTCGTCAAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTC 620227 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | ||| || || ||||| || ||| | || |||||||| Sbjct 620226 AGACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCA 620167 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || || || || | |||||||| ||||||||| Sbjct 620166 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCCGATTACAA 620107 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || || ||||| ||| Sbjct 620106 CATTCAGAAGGAGTCGACCTTGCATTTGGTT 620076 Score = 98.7 bits (108), Expect = 7e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 23626 AAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATA 23685 ||||| || || || || || ||||| || || || || | ||||||| |||||| Sbjct 620498 AAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTCGGACACCATTGAAAAC 620439 Query 23686 TTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTT 23745 | || || || ||||| || ||| | || |||||||| |||||| | || || Sbjct 620438 GTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAGCGTCTTATCTTC 620379 Query 23746 GCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCC 23805 ||||||||||||||||| |||| |||||| | ||| |||||||| || || ||||| Sbjct 620378 GCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCG 620319 Query 23806 AC 23807 || Sbjct 620318 AC 620317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337973842809440