Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq3325 134 9e-27
seq1 122 6e-23
seq4812 114 9e-21
>seq3325
Length=21082
Score = 134 bits (148), Expect = 9e-27
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || | || ||||| || |||||||| ||||| || | ||
Sbjct 20299 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTAGAGCCTTCG 20358
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| |||||| |||| ||||| ||||| || || | || ||||||||
Sbjct 20359 GACACTATTGAAAACGTAAAGGCTAAAATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 20418
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || ||||||||||||||||| |||| |||||| | ||| ||||||
Sbjct 20419 CAGCGTCTTATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGACTACAAC 20478
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 20479 ATCCAGAAGGAGTCGAC 20495
Score = 114 bits (126), Expect = 9e-21
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| || || || || || || || || || ||||| | |||||||| | |
Sbjct 20526 AATGCAGATCTTTGTCAAGACACTTACTGGCAAGACCATCACCTTGGAAGTTGAGCCATC 20585
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||||| | || || || ||||| || || | || ||||||||
Sbjct 20586 AGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCA 20645
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| || || || ||||||||||||||||| |||| |||||| | |||||||||
Sbjct 20646 GCAGCGATTGATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGATTACAA 20705
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| || || || || || || ||||| |||
Sbjct 20706 CATCCAGAAGGAATCGACTTTGCATTTGGTT 20736
Score = 109 bits (120), Expect = 4e-19
Identities = 146/204 (72%), Gaps = 7/204 (3%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA-- 23668
|||||||||||||| || || | || ||||| || |||||||| || || || | |
Sbjct 20834 ATGCAGATTTTCGTAAAGACTTTGACCGGAAAGACAATCACTCTTGAGGTGGAGCCAAGA 20893
Query 23669 -----CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723
|||||||| |||||| |||| ||||| ||||| || || | || ||
Sbjct 20894 GCCTTCGGACACTATTGAAAACGTAAAGGCGAAAATCCAGGACAAGGAGGGAATCCCCCC 20953
Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783
|||||| |||||| | || || ||||| || || ||||| || | |||||||| ||
Sbjct 20954 AGATCAGCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGA 21013
Query 23784 TTACAACATACAAAAAGAGTCCAC 23807
||||||||| || || ||||||||
Sbjct 21014 TTACAACATCCAGAAGGAGTCCAC 21037
Score = 104 bits (114), Expect = 2e-17
Identities = 145/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| || || || ||| | || ||||| || || ||| | || || || ||
Sbjct 19384 AAAATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATTACTTTGGAGGTGGAGCCC 19443
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| || || |||| ||| | || | ||||| || || || || | || |||||
Sbjct 19444 TCCGATACGATTGAGAATGTGAAGGC-CAAAATCCAGGATAAGGAGGGCATCCCCCCAGA 19502
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| |||||| | || || ||||||||||||||||| |||| |||||| | ||| ||
Sbjct 19503 TCAGCAGCGTCTTATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGACTA 19562
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || || ||||| ||
Sbjct 19563 CAACATCCAGAAGGAGTCGAC 19583
Score = 95.1 bits (104), Expect = 8e-15
Identities = 142/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| || || || || | || || ||||| |||||||| |||||||| | |
Sbjct 19614 AATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTC 19673
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| || | || ||| | || | || | | ||||| || || | || |||||||
Sbjct 19674 TGATACCATCGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGAATCCCCCCAGATC 19732
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| |||||| | || || ||||| || || ||||| || | |||||||| |||||||
Sbjct 19733 AGCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACA 19792
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| || || ||||||||
Sbjct 19793 ACATCCAGAAGGAGTCCAC 19811
Score = 95.1 bits (104), Expect = 8e-15
Identities = 142/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| || || || || | || || ||||| |||||||| |||||||| | |
Sbjct 19842 AATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTC 19901
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| || | || ||| | || | || | | ||||| || || | || |||||||
Sbjct 19902 TGATACCATCGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGAATCCCCCCAGATC 19960
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| |||||| | || || ||||| || || ||||| || | |||||||| |||||||
Sbjct 19961 AGCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACA 20020
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| || || ||||||||
Sbjct 20021 ACATCCAGAAGGAGTCCAC 20039
Score = 93.3 bits (102), Expect = 3e-14
Identities = 147/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| || || ||||| || || || || || ||||| || || || || | |
Sbjct 20070 AATGCAGATCTTTGTCAAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAACCTTC 20129
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||||| | || || || ||||| || || | || ||||||||
Sbjct 20130 GGACACCATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCCCCAGATCA 20189
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || ||||| || || || || || | ||||| | |||||||||
Sbjct 20190 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTGTCCGATTACAA 20249
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| || || ||||| || || || || |||
Sbjct 20250 CATTCAGAAGGAGTCGACCTTGCACTTGGTT 20280
>seq1
Length=22559587
Score = 122 bits (134), Expect = 6e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| ||||| || ||||||||||| || || |||||||| || || || |
Sbjct 20155318 AAGATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCT 20155377
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
|||| ||| | |||| | ||| || ||| ||||||||||| | || ||||||
Sbjct 20155378 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 20155437
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| |||||| | || || || ||||| || |||||||| | ||||| | || ||
Sbjct 20155438 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 20155497
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819
||||| || || |||||||| || || || ||
Sbjct 20155498 AACATTCAGAAGGAGTCCACTTTGCACTTGGT 20155529
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| ||||||||||| || || || ||||| | || || || | ||
Sbjct 1137171 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 1137112
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || || ||||| || || | || ||||||||
Sbjct 1137111 GACACCATCGAGAATGTGAAGGC-CAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 1137053
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || |||||||| || ||||| |||| || || | ||| |||||
Sbjct 1137052 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGAACCCTGTCCGACTACAA 1136993
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 1136992 CATCCAGAAGGAGTCGAC 1136975
>seq4812
Length=908733
Score = 114 bits (126), Expect = 9e-21
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| ||||| ||||| || || || || || ||||| || || || || | |
Sbjct 620286 AATGCAGATCTTCGTCAAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTC 620227
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||||| | ||| || || ||||| || ||| | || ||||||||
Sbjct 620226 AGACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCA 620167
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || ||||| || || || || || | |||||||| |||||||||
Sbjct 620166 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCCGATTACAA 620107
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| || || ||||| || || ||||| |||
Sbjct 620106 CATTCAGAAGGAGTCGACCTTGCATTTGGTT 620076
Score = 98.7 bits (108), Expect = 7e-16
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 23626 AAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATA 23685
||||| || || || || || ||||| || || || || | ||||||| ||||||
Sbjct 620498 AAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTCGGACACCATTGAAAAC 620439
Query 23686 TTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTT 23745
| || || || ||||| || ||| | || |||||||| |||||| | || ||
Sbjct 620438 GTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAGCGTCTTATCTTC 620379
Query 23746 GCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCC 23805
||||||||||||||||| |||| |||||| | ||| |||||||| || || |||||
Sbjct 620378 GCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCG 620319
Query 23806 AC 23807
||
Sbjct 620318 AC 620317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337973842809440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |