Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 143 6e-29 seq4812 141 2e-28 seq3325 123 6e-23 seq8012 120 7e-22 >seq1 Length=22559587 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || || || || |||| ||||| |||| || |||| || || Sbjct 1136960 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCGTCC 1137019 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || || || || |||||||| Sbjct 1137020 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCC 1137079 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || | ||||| || || ||||| ||| Sbjct 1137080 TGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTC 1137139 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||||| | ||| | |||||| Sbjct 1137140 TTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 1137171 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| | |||||| || || || | || || || | | || Sbjct 20155542 ACGCAGGCGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 20155483 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||||||||| || || || || || || ||||| || Sbjct 20155482 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 20155423 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| || ||||| || ||| |||||| || || || | ||| || || | Sbjct 20155422 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAG 20155363 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719 ||||| ||||||||||| | || || | ||| | ||||| || || Sbjct 20155362 AGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATCTTGTG 20155315 >seq4812 Length=908733 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || || | |||||||||| |||||| | ||||| || |||||||| || Sbjct 620089 GTCGACTCCTTCTGAATGTTGTAATCGGACAAAGTGCGACCATCCTCAAGCTGCTTTCCG 620148 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 |||||||| || || || || || || |||||||| ||||||||||||||||| || Sbjct 620149 GCGAAGATGAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCTTTG 620208 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||| ||||||||||| | ||||| || | ||||| |||||||| || | |||| Sbjct 620209 ACGTTTTCAATGGTGTCTGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTT 620268 Query 225697 TTTATGAACACTTGCATT 225714 || | ||| | |||||| Sbjct 620269 TTGACGAAGATCTGCATT 620286 Score = 136 bits (150), Expect = 9e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 225520 GATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCG 225579 || || || |||| || ||||||| |||||| | || || || |||||||| || ||| Sbjct 620500 GACTCCTTCTGGATGTTATAATCGGACAAAGTGCGACCGTCCTCAAGCTGCTTTCCGGCG 620559 Query 225580 AAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACA 225639 |||||||| || || || || || |||||||| |||||||||||||| || ||| || Sbjct 620560 AAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTTGGCCTTTACG 620619 Query 225640 GCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTT 225699 ||| |||||||| || | ||||| || | ||||| |||||||| || | |||||| Sbjct 620620 TTTTCAATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTG 620679 Query 225700 ATGAACACTTGCATT 225714 | ||| | |||||| Sbjct 620680 ACGAAGATCTGCATT 620694 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| || || || || |||| ||||| |||| || || | || || Sbjct 620302 AGTACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCC 620361 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || ||||||||||| || || || || || |||||||| ||||||||| Sbjct 620362 TCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCT 620421 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||| |||||||| || | ||||| || | ||||| ||| Sbjct 620422 TGGATCTTGGCCTTGACGTTTTCAATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTC 620481 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| || | |||||| Sbjct 620482 TTGCCAGTAAGAGTTTT 620498 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225513 GAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTT 225572 ||| || || || || |||| ||||| || | || || | || || || || ||||| Sbjct 619857 GAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCCTCCAGTTGCTT 619916 Query 225573 CCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTG 225632 || |||||||| || || || ||||| || ||||| || ||||||||||||||||| Sbjct 619917 GCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGC 619976 Query 225633 CTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 ||| || ||| ||||| || || | || || || | || || ||||| || ||||| Sbjct 619977 CTTGACGTTTTCAATGGTATCAGAAGGCTCGACTTCCAGAGTAATGGTCTTTCCGGTCAA 620036 Query 225693 AGTTTTTATGAACACTTGCAT 225713 ||| || | ||| | |||||| Sbjct 620037 AGTCTTCACGAAGATTTGCAT 620057 >seq3325 Length=21082 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || || | |||||||||| || || | ||||| || |||||||| || Sbjct 20267 GTCGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGACCATCCTCAAGCTGCTTTCCG 20208 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 |||||||| || || || || || || || || || ||||||||||||||||| ||| Sbjct 20207 GCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGGATCTTAGCCTTG 20148 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||| |||||||| || | |||||| || | ||||| |||||||| || | |||| Sbjct 20147 ACGTTTTCAATGGTGTCCGAAGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTT 20088 Query 225697 TTTATGAACACTTGCATT 225714 || | || | |||||| Sbjct 20087 TTGACAAAGATCTGCATT 20070 Score = 116 bits (128), Expect = 9e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||| || |||| |||||||||| || || | || || || || || || || Sbjct 20724 AGTCGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCCAGTTGTTTGCC 20665 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 |||||||| | ||| || || || || || || || |||||||| |||||||| ||| Sbjct 20664 GGCGAAGATCAATCGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 20605 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||| ||| ||||||||||| | || || || || ||||| |||||||| || Sbjct 20604 CACATTTTCAATGGTGTCTGATGGCTCAACTTCCAAGGTGATGGTCTTGCCAGT 20551 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| || || || || |||| ||||| |||| || || | || || Sbjct 19598 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCC 19539 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || ||||||||||| || || || || || || || || ||||| || Sbjct 19538 TCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTATCC 19479 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||| || || || || |||| ||||| || || || || ||| Sbjct 19478 TGGATTTTGGCCTTCACATTCTCAATCGTATCGGAGGGCTCCACCTCCAAAGTAATGGTC 19419 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || ||||| || || | || | |||||||| Sbjct 19418 TTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 19384 Score = 107 bits (118), Expect = 5e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| || || || || |||| ||||| |||| || || | || || Sbjct 20510 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCC 20451 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || ||||||||||| || || || || || || || || |||||||| Sbjct 20450 TCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCC 20391 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || ||| || ||||| || | || || || | ||||| ||| Sbjct 20390 TGGATTTTAGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTACTTCAAGAGTGATGGTC 20331 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | ||| | ||||| Sbjct 20330 TTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 20299 >seq8012 Length=346389 Score = 120 bits (132), Expect = 7e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| ||||| ||| |||| || ||||| ||| |||| ||||| ||| | || || Sbjct 6371 CCAAATTTATAACGTAATTGTTACCGCACATGCTTTTATTATAATTTTTTTTATAGTAAT 6430 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || || || ||||||||||| ||||| ||||| | || || || || Sbjct 6431 ACCAATTATAATTGGAGGATTTGGAAATTGATTAGTTCCATTAATATTGGGGGCCCCAGA 6490 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 ||| || || ||| | | || |||||||| |||||| |||| || ||| Sbjct 6491 TATAGCATTCCCACGAATAAATAATATAAGATTTTGACTACTGCCCCCT 6539 Score = 98.7 bits (108), Expect = 2e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || ||||||||||| |||||||||||||| | |||||||| ||||| |||| Sbjct 6957 TTCAGGGTGTCCAAAAAATCAAAATAAATGTTGATATAAAATAGGATCCCCTCCTCCTGC 6898 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || |||||||| ||||| ||||||| ||| ||||| Sbjct 6897 CGGGTCAAAAAATGAGGTATTTAAATTTCGATCTGTTAA 6859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192398575623920