Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1 176 4e-39 >seq1 Length=22559587 Score = 176 bits (194), Expect = 4e-39 Identities = 405/609 (67%), Gaps = 13/609 (2%) Strand=Plus/Minus Query 29632 CTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGT 29691 ||| ||||| | ||||||| ||||| |||| ||||||| ||| | || |||| ||| Sbjct 6128270 CTCCAGCTGCTCCTTCAGCGGCTCCACATGGTTCAGGTAGATGTGCGTGTCGCCCATGGT 6128211 Query 29692 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29751 ||| ||||| ||||| || | || || || || || || ||||||| ||||| || | Sbjct 6128210 GTGCACAAAGTCTCCGGGCTTCAGACCCGTCACATGGGCGATCATGTGGGTGAGCAGGGC 6128151 Query 29752 GTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTG 29811 |||| ||||||||| |||||||| || || |||||||| | ||||||||| ||||| Sbjct 6128150 GTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCTCTGGTACAGCTG 6128091 Query 29812 GCACGAGAGCTCTCCGT-CG-CTC----ACGTAAAACTGACACATGGCA-TGGCACGGAG 29864 ||| || ||||| ||| || ||| ||||| ||||| || |||| ||||| |||| Sbjct 6128090 GCAGGAAAGCTCACCGCGCGTCTCTGAGACGTAGAACTGTGCCA-GGCAGTGGCATGGAG 6128032 Query 29865 GAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTT 29924 |||||||||| | ||| || ||||| || ||| ||||||||||||||| Sbjct 6128031 GAAGGGCCATCTTTGGTATGTCCAGTGGATTCCATGCCGACATGATGATGCGCCTGTCCG 6127972 Query 29925 CTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 29984 || || ||| ||||| || | | | ||||||| || | ||| | || || Sbjct 6127971 AAGGATTATTCTTGATGGTCTCGATCACCTGGCGCAGCTGGTCGATGCCCTTGCCGTTGT 6127912 Query 29985 AGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCG 30044 | || | ||||| | ||||||||| ||||| |||| Sbjct 6127911 AATCGTCGTCGCATTTGCCGTACTCCGCCCCAAAATGACGCCACTGGAAGCCGTATACCG 6127852 Query 30045 GTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAAC 30104 | |||||||| || | | | | | | ||| |||||||| || || |||| | Sbjct 6127851 GGCCCAGGTCGCCGACGGCGCGCTCCGTGTGCCCCAGCTTGTCCAGGAACTCCCTGGTGC 6127792 Query 30105 CGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTC 30164 ||| |||||||||| | || ||| || ||| |||| || || ||| Sbjct 6127791 TGTTCTCGTCCCAGATGTGCACGTTCTTATCCTGCAGCAGCTTGGCGTCCGTCTTGCCTG 6127732 Query 30165 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAG 30222 |||||||| ||||||||||| | || || | || ||||| | |||||| || || Sbjct 6127731 CCACGAACCAGAGCAGCTCCTCGGCCAC--CCCGCGAAAGAAGACGCGCTTGGTGGTCAG 6127674 Query 30223 GAG-GGGAA 30230 || ||||| Sbjct 6127673 CAGCGGGAA 6127665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406120233010480