Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4812 149 2e-30 seq1 147 5e-30 seq3325 141 2e-28 seq2 136 1e-26 >seq4812 Length=908733 Score = 149 bits (164), Expect = 2e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||||| || || || || |||||||| |||||||| |||||| Sbjct 620282 CAGATCTTCGTCAAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTCAGAC 620223 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| ||||| || ||||| || || || || || || ||||| Sbjct 620222 ACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAG 620163 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| ||||| || ||||| | ||| | ||||||| ||| | Sbjct 620162 CGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCCGATTACAACATT 620103 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || ||||| | ||| Sbjct 620102 CAGAAGGAGTCGACCTTGCATTTGGTT 620076 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||||| || || || || |||||||| |||||||| || ||| Sbjct 620690 CAGATCTTCGTCAAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTCGGAC 620631 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || || || || ||||| || || || || || || ||||| Sbjct 620630 ACCATTGAAAACGTAAAGGCCAAAATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAG 620571 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||||||||| ||||| || || || | ||| | ||||||||||| || Sbjct 620570 CGTCTTATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACTTTGTCCGATTATAACATC 620511 Query 178104 CAAAAAGAATC 178114 || || || || Sbjct 620510 CAGAAGGAGTC 620500 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 177935 GAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAA 177994 ||||||||| || || || || |||||||| |||||||| || |||||||| || || Sbjct 620499 GAAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTCGGACACCATTGAAAA 620440 Query 177995 CGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTT 178054 |||||| ||||| || ||||| || || || || || || ||||| || |||||||| Sbjct 620439 CGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAGCGTCTTATCTT 620380 Query 178055 CGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATC 178114 |||||| ||||| || || || ||| | || || |||| || ||| |||| || || || Sbjct 620379 CGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTC 620320 Query 178115 AACACTGCATCTTG 178128 || || || |||| Sbjct 620319 GACCCTCCA-CTTG 620307 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| ||| | || ||||| || || || || || || || || || Sbjct 620054 CAAATCTTCGTGAAGACTTTGACCGGAAAGACCATTACTCTGGAAGTCGAGCCTTCTGAT 619995 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| || ||||| || ||||| || || |||||||| Sbjct 619994 ACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAGCAG 619935 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || || || || || ||| | || || | || || ||| || Sbjct 619934 CGTCTCATCTTCGCCGGCAAGCAACTGGAGGACGGACGCACCCTGTCTGACTACAACATC 619875 Query 178104 CAAAAAGAATCAACACT 178120 || || || || || || Sbjct 619874 CAGAAGGAGTCGACCCT 619858 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || |||||||| || || || || ||| | |||||||||||||| Sbjct 620837 AAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAACAGCGATTGATCTTCGCCGGAAAG 620778 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || || || | ||| | | ||||| ||| |||| || || || || || || Sbjct 620777 CAGCTTGAGGACGGTCGCACTTTGTCTGATTACAACATCCAGAAGGAGTCGACCCTCCA- 620719 Query 178125 CTTG 178128 |||| Sbjct 620718 CTTG 620715 >seq1 Length=22559587 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| ||||| || || || |||||| | |||||||| || ||| Sbjct 1137168 CAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCGGAC 1137109 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| || |||||||| || || ||||| Sbjct 1137108 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAG 1137049 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || |||| || ||| || Sbjct 1137048 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGAACCCTGTCCGACTACAACATC 1136989 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 1136988 CAGAAGGAGTCGACCCTCCACCTGGT 1136963 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || ||||| || ||||| ||| || || Sbjct 20155324 CAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCTTCGGAT 20155383 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| ||||||||||||||||||||||| ||||| || ||||| Sbjct 20155384 ACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAG 20155443 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| |||||||| | || || | || |||||| | Sbjct 20155444 CGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATT 20155503 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 20155504 CAGAAGGAGTCCACTTTGCA-CTTG 20155527 >seq3325 Length=21082 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||||| || || || || |||||||| ||||||||| || ||| Sbjct 20074 CAGATCTTTGTCAAAACTCTTACTGGCAAGACCATCACCCTGGAGGTGGAACCTTCGGAC 20133 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| || ||||| || || ||||| || || ||||| Sbjct 20134 ACCATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCCCCAGATCAGCAG 20193 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| ||||| || ||||| | || || ||||||| ||| | Sbjct 20194 CGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTGTCCGATTACAACATT 20253 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || |||| |||| || Sbjct 20254 CAGAAGGAGTCGACCTTGCA-CTTGGTT 20280 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || |||||| | || || || |||||| Sbjct 20530 CAGATCTTTGTCAAGACACTTACTGGCAAGACCATCACCTTGGAAGTTGAGCCATCAGAC 20589 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| |||||||| || || ||||| || || ||||| Sbjct 20590 ACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAGCAG 20649 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||||||||| ||||| || || || ||| | || || ||||||| ||| || Sbjct 20650 CGATTGATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGATTACAACATC 20709 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| || ||||| | ||| Sbjct 20710 CAGAAGGAATCGACTTTGCATTTGGTT 20736 Score = 120 bits (132), Expect = 7e-22 Identities = 155/212 (73%), Gaps = 8/212 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA-----AGC- 177977 || |||||||| || ||| | || ||||| || ||||| || |||||||| ||| Sbjct 20837 CAGATTTTCGTAAAGACTTTGACCGGAAAGACAATCACTCTTGAGGTGGAGCCAAGAGCC 20896 Query 177978 -TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGA 178036 || ||||| || || ||||| || || || |||||||| || |||||||| || || Sbjct 20897 TTCGGACACTATTGAAAACGTAAAGGCGAAAATCCAGGACAAGGAGGGAATCCCCCCAGA 20956 Query 178037 CCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||||| || || || ||||||||||| ||||| || ||||| | ||| | | ||||| Sbjct 20957 TCAGCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTA 21016 Query 178097 TAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||| |||| || || || || || || |||| Sbjct 21017 CAACATCCAGAAGGAGTCCACCCTTCA-CTTG 21047 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || ||||| ||||| || || || || || || Sbjct 19618 CAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTCTGAT 19677 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| || |||||||| || || ||||| Sbjct 19678 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAG 19737 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||||||||| ||||| || ||||| | ||| | | ||||| ||| || Sbjct 19738 CGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACAACATC 19797 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 19798 CAGAAGGAGTCCACCCTTCA-CTTG 19821 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || ||||| ||||| || || || || || || Sbjct 19846 CAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACTCTTGAAGTTGAGCCTTCTGAT 19905 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| || |||||||| || || ||||| Sbjct 19906 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAG 19965 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||||||||| ||||| || ||||| | ||| | | ||||| ||| || Sbjct 19966 CGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACTTTGTCTGATTACAACATC 20025 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 20026 CAGAAGGAGTCCACCCTTCA-CTTG 20049 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | || ||||| || ||||| || || || || || ||| Sbjct 20302 CAGATTTTCGTCAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTAGAGCCTTCGGAC 20361 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || || || |||||||| || || ||||| || || ||||| Sbjct 20362 ACTATTGAAAACGTAAAGGCTAAAATCCAGGACAAGGAGGGCATCCCCCCAGATCAGCAG 20421 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| ||||| || || || ||| | || || |||| || ||| || Sbjct 20422 CGTCTTATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGACTACAACATC 20481 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 20482 CAGAAGGAGTCGACCCTCCA-CTTG 20505 Score = 105 bits (116), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| || | || ||||| || || || | |||||||| Sbjct 19384 AAAATGC---AGATCTTTGTGAAGACCTTGACTGGAAAGACCATTACTTTGGAGGTGGAG 19440 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| || || || ||||| || || || || ||||| || || || ||||| || Sbjct 19441 CCCTCCGATACGATTGAGAATGTGAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCA 19500 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || |||||||||||||| ||||| || || || ||| | || || |||| Sbjct 19501 GATCAGCAGCGTCTTATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGTCCGAC 19560 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| |||| || || || || || || |||| Sbjct 19561 TACAACATCCAGAAGGAGTCGACCCTCCA-CTTG 19593 >seq2 Length=2985096 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| || || || || || ||||| | ||||| || || || Sbjct 123742 CAAATTTTCGTGAAAACCCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGAT 123801 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| || || || || || |||||||| Sbjct 123802 ACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAG 123861 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| ||| | || |||||| | ||| | |||| || ||| || Sbjct 123862 CGTCTGATCTTCGCCGGAAAGCAGTTGGAGGATGGACGCACTTTGTCCGACTACAACATC 123921 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 123922 CAGAAGGAGTCCACCCTCCA-CTTG 123945 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| | ||||| || || || Sbjct 123970 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGAT 124029 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| |||||||| || || || || || |||||||| Sbjct 124030 ACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAG 124089 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||| | || || ||| | ||| | |||| || || || Sbjct 124090 CGTTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGACGCACTTTGTCCGACTACAATATC 124149 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || ||||| Sbjct 124150 CAGAAGGAGTCTACTTTGCAT 124170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203597330043920