Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1 132 4e-26 seq3325 127 2e-24 seq4812 111 1e-19 seq5016 93.3 4e-14 >seq1 Length=22559587 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | |||||| || || || ||||||||| ||||| |||||||| Sbjct 1136945 CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1137004 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||||||||| ||||| ||||| || || | ||| Sbjct 1137005 AGGGTTCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 1137064 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||||| | | ||||| | ||||||| Sbjct 1137065 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACC 1137124 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || || || || || || || ||||| || |||||| Sbjct 1137125 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATG 1137172 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| |||| ||| ||||||||||||||||||||| ||| Sbjct 20155547 CCACCACGCAGGCGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 20155488 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| ||||| ||||| || || | ||| Sbjct 20155487 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 20155428 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||||| ||| | || |||| || | | ||| || | || || Sbjct 20155427 ATTCCTTCTTTGTCC-TGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGAC 20155369 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||||| || ||||| ||||| |||||||| || Sbjct 20155368 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATCTT 20155318 >seq3325 Length=21082 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||| || || || ||||||||| ||||| |||||||| Sbjct 19613 CCACCGCGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 19554 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || || ||||||||||| || || ||||| || || | ||| Sbjct 19553 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGG 19494 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||| ||| |||||| ||||| | | || ||| | ||||||| Sbjct 19493 ATGCCCTCCTTATCCTGGATTTTGGCCTTCACATTCTCAATCGTATCGGAGGGCTCCACC 19434 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| || || || || || |||| ||||| || || |||||||| || Sbjct 19433 TCCAAAGTAATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 19384 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||| || || || ||||||||| ||||| |||||||| Sbjct 20525 CCACCGCGGAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 20466 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || || ||||||||||| || || ||||| || || | ||| Sbjct 20465 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGG 20406 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || |||| || | ||| | | |||||| | ||| || Sbjct 20405 ATGCCCTCCTTGTCC-TGGATTTTAGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTAC 20347 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| ||||| |||||||||||||| Sbjct 20346 TTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 20299 Score = 125 bits (138), Expect = 7e-24 Identities = 171/235 (73%), Gaps = 9/235 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||||||||| | ||||| || || ||| ||||||||| ||||| || || || Sbjct 21067 CCACCGCGTAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 21008 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || |||||||| |||||||| || || ||||| || || | ||| Sbjct 21007 AAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGG 20948 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC-----GCTC--G 41807 | | |||||||||| || |||| || | ||| | | |||||| |||| | Sbjct 20947 ATTCCCTCCTTGTCC-TGGATTTTCGCCTTTACGTTTTCAATAGTGTCCGAAGGCTCTTG 20889 Query 41808 ACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||||| | || || || || || |||| |||||||||||||||||||| Sbjct 20888 GCTCCACCTCAAGAGTGATTGTCTTTCCGGTCAAAGTCTTTACGAAAATCTGCAT 20834 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||||||||| | ||||| || || ||| ||||||||| ||||| || || || Sbjct 19841 CCACCGCGTAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 19782 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || |||||||| |||||||| || || ||||| || || | ||| Sbjct 19781 AAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGG 19722 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||||| | | || || | ||| || Sbjct 19721 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCTCAACT 19662 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || |||| ||||| || || |||||||| Sbjct 19661 TCAAGAGTGATGGTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 19615 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||||||||| | ||||| || || ||| ||||||||| ||||| || || || Sbjct 20069 CCACCGCGTAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 20010 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || |||||||| |||||||| || || ||||| || || | ||| Sbjct 20009 AAAGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGG 19950 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||||| | | || || | ||| || Sbjct 19949 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCAGAAGGCTCAACT 19890 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || |||| ||||| || || |||||||| Sbjct 19889 TCAAGAGTGATGGTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 19843 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||||| || |||||||| ||||| || ||||| Sbjct 20753 CCACCACGCAGACGGAGAACCAAATGCAAAGTCGATTCCTTCTGGATGTTGTAATCGGAC 20694 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || || ||||||||||| |||| ||||| || || | ||| Sbjct 20693 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGG 20634 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| || ||||| | ||||| | ||| || Sbjct 20633 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCTGATGGCTCAACT 20574 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || ||||| || || |||||||| Sbjct 20573 TCCAAGGTGATGGTCTTGCCAGTAAGTGTCTTGACAAAGATCTGCAT 20527 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| |||| || ||||||||||||||| || ||||| Sbjct 20297 CCACCACGCAGACGGAGAACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGAC 20238 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| |||||||| || || ||||| || || | ||| Sbjct 20237 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 20178 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| | || | || || | ||| | | ||||| | ||||| Sbjct 20177 ATGCCCTCCTTGT-CTTGGATCTTAGCCTTGACGTTTTCAATGGTGTCCGAAGGTTCCAC 20119 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || || || || || |||||||| Sbjct 20118 CTCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTGACAAAGATCTGCAT 20071 >seq4812 Length=908733 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||||| || ||||||||||||||| || ||||| Sbjct 620059 CCACCACGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGAATGTTGTAATCGGAC 620118 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || |||||||| |||||||| || || ||||| || || | |||| Sbjct 620119 AAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 620178 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | || | || |||| ||| | | ||||| | |||||| Sbjct 620179 ATACCCTCCTTGT-CTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCTGAAGGCTCCAC 620237 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || || || ||||| |||||||| Sbjct 620238 CTCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTGACGAAGATCTGCAT 620285 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| |||||||| ||||| | ||||| |||| || |||||||| |||||||| Sbjct 620502 CTCCTTCTGGATGTTATAATCGGACAAAGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAA 620561 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || ||||| || || | ||||| | ||||||||| |||||| ||| | || Sbjct 620562 GATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTTGGCCTTTA-CGT 620620 Query 41791 CGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 || | |||| | ||||||||||| || || || || || || || || || | Sbjct 620621 TTTCAATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGAGTTTTGA 620680 Query 41850 CGAAAATCTGCAT 41862 |||| |||||||| Sbjct 620681 CGAAGATCTGCAT 620693 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||| || || || ||||||||| ||||| |||||||| Sbjct 620287 CCACCGCGCAGACGGAGTACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 620346 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || || ||||||||||| || || ||||| || || | |||| Sbjct 620347 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGACGCTGCTGATCTGGGGGA 620406 Query 41756 ACGCTCTCCTTGTC 41769 | | ||||||||| Sbjct 620407 ATACCCTCCTTGTC 620420 Score = 98.7 bits (108), Expect = 9e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| || |||||||| |||| || || |||||||||||||| Sbjct 619866 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCCTCCAGTTGCTTGCCGGCGAA 619925 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || || ||||| ||||| | ||||| | ||||||||| Sbjct 619926 GATGAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTC 619964 >seq5016 Length=829163 Score = 93.3 bits (102), Expect = 4e-14 Identities = 218/327 (67%), Gaps = 4/327 (1%) Strand=Plus/Minus Query 49617 GCCGATGATGCCGCAGCCGAGTCTGCTGCCAGAGTTGCCGGTGATTTTGCTCTGCTCGTC 49676 ||| |||| ||||||||| | | | |||| ||| || ||| |||||| |||||| Sbjct 682139 GCCAATGACGCCGCAGCCAATGCGGGCACCAGCGTTTCCCGTGGACTTGCTCAGCTCGTG 682080 Query 49677 GTCGCCCAGGCCAAAGTCGTCCTCCATGGCGTGCACCACGATGCTGCGCCCGAGAATGTT 49736 | | ||| |||| | || || | |||||| ||||| | | ||||||| | ||| | Sbjct 682079 GCCACCCTGGCCGAGATCATCGGCATCGGCGTGGACCACAACGGTGCGCCCTATGATGCT 682020 Query 49737 GTGCGGGCCGAACAGCGACAGCATCGCGTCAAACGTGTCGAACAGGGTG--ACGGTCGAG 49794 || | |||||||| || | | ||| ||| ||| || | ||| || |||| Sbjct 682019 GTCGGCGCCGAACAACGTGATCTTCGAGTCGGTAATGTTGACCTTCGTGGGACAGTCG-- 681962 Query 49795 CCGTCCGAGCACACGTTGCCCAGATCGCCGAGGTGACGCCGCGGGCTCGCGGGACCGCCG 49854 ||| || | |||||||||||| || |||||||| | | |||||| | ||| Sbjct 681961 CCGCTCGCCTCAATGTTGCCCAGATCTCCCAGGTGACGATTCTCGTCGGCGGGAGCTCCG 681902 Query 49855 TGCGGCTGCCCGAACGGGTTCAGGTGCTCGCCTGCTGACGTGCACCCGTTCGAGGTGTCG 49914 ||| || || | ||||| | |||| || | ||| |||| ||||| | | |||| Sbjct 681901 TGCTCCTTGCCATAGGGGTTGAAGTGCGGTCCGGACGACATGCAGCCGTTGGTGTTGTCC 681842 Query 49915 CCGAATTCGTGGATGTGTATACCGTGA 49941 || || ||||| | ||| | |||||| Sbjct 681841 CCAAACTCGTGAACGTGGAATCCGTGA 681815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462253840016000