Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5516 131 2e-25 seq5566 89.7 5e-13 >seq5516 Length=367667 Score = 131 bits (144), Expect = 2e-25 Identities = 298/443 (67%), Gaps = 8/443 (2%) Strand=Plus/Plus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 |||||||| || || ||||| || | |||||||||| | |||||| ||||| || Sbjct 269976 AACATCAGCACGGCAAAGTCGCAGTGAAGGCCCTCGTCTCGGGAGATAAGCTCGTTGGAG 270035 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 || |||| || |||||| || || ||||| | ||| || || | |||||| || Sbjct 270036 AAGGTCAGTCCCGGCATCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCG 270095 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTC 17133 ||||| || |||||||||| || || || || | || || || | | || | | Sbjct 270096 CTGAAGAAGATGCCCTCGACGGCAGCGAAGGCAATGATGCGCTCTCCGAAATTGGCCGAC 270155 Query 17134 TTTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC--CATCGT 17190 || | | || ||||| | |||| || || || |||| | || | |||||| Sbjct 270156 TTGG--AGGAGATCCAGGAAAGAGCCCAGTCCGCCTTGCGCTTCA--CAGCCGGCATCGT 270211 Query 17191 TTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAG 17250 || ||||| || || | | || | || |||| || || || ||||| || Sbjct 270212 CTCGATGGCGTTGAACAGGTATTCCCGCTGGTGCGGGTCCCGGATGTATGTGTCGATCAG 270271 Query 17251 TAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCG 17310 | |||||||| || ||||| | |||||||||||| || || || ||||| ||||| || Sbjct 270272 CACACTGTACATCTCCGAGTGCACGTTCTCCATGGCGATTTGGAAGCCGTAGAAGCAGCG 270331 Query 17311 GGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCC 17370 || |||| || ||||| ||| | ||| || || | || || || || |||||||| Sbjct 270332 TGCCTCCGTGATCTGAACCTCCTGGCTGAAGCGCTCGACCAGGTTCTCATTTACGATGCC 270391 Query 17371 GTCGCTCGCGGCGAAAAACGCCA 17393 ||| |||||||| || |||| Sbjct 270392 ATCGGAGGCGGCGAAGAAGGCCA 270414 >seq5566 Length=752539 Score = 89.7 bits (98), Expect = 5e-13 Identities = 178/260 (68%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 ||||| || || | ||| ||||| | | || |||||||| | ||||||||| || Sbjct 125971 TTCATGTACCGCACCTTGCCGAATATCGCGCGCTCCTTCCAGCCCATGTCGTGGACACCG 126030 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTA 119902 | | || ||| | ||| || || || ||||||||||| ||| || | ||| || Sbjct 126031 CCAATGGACCACATGCAGCCGACATAGCCGTTGGGATCGCGTCCGTCGAGGCTGTACTTG 126090 Query 119903 TCGTTTAAGTAGATA-CAGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAt 119961 ||||| || || || || | | ||| ||| || || || |||| || || || Sbjct 126091 TCGTTCAACAGAATCGCATACTCC-AGCGCCTGTTCCGGGGTGGCGGTCCACTCGAGAAT 126149 Query 119962 ttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAG 120021 ||||| ||||||||||| || | | || ||||| || || || || |||| || || Sbjct 126150 CTTTTTGGCCCAGTACATGCGCAGAAAGCCGTGCATCTTGCCCTCGCGCACCAGCTGCAG 126209 Query 120022 TTGTGCGGCGTTCCATAAGG 120041 ||| |||| |||||| |||| Sbjct 126210 TTGCGCGGAGTTCCA-AAGG 126228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517508511388440