Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq5566 102 8e-17 seq5516 100 3e-16 >seq5566 Length=752539 Score = 102 bits (112), Expect = 8e-17 Identities = 179/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 |||||||| || | ||| || |||| | ||||||||||| | ||||||||| || Sbjct 125971 TTCATGTACCGCACCTTGCCGAATATCGCGCGCTCCTTCCAGCCCATGTCGTGGACACCG 126030 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTA 119055 | | | ||| | || || || || ||||||||||| |||||| | |||||| Sbjct 126031 CCAATGGACCACATGCAGCCGACATAGCCGTTGGGATCGCGTCCGTCGAGGCTGTACTTG 126090 Query 119056 TCGTTTAAGTAGATA-CAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAt 119114 ||||| || || || || | | ||| |||||| || |||| || || || Sbjct 126091 TCGTTCAACAGAATCGCATACTCC-AGCGCCTGTTCCGGGGTGGCGGTCCACTCGAGAAT 126149 Query 119115 ttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAG 119174 ||||| ||||||||||| || | | | |||||||| || |||||| | || ||| || Sbjct 126150 CTTTTTGGCCCAGTACATGCGCAGAAAGCCGTGCATCTTGCCCTCGCGCACCAGCTGCAG 126209 Query 119175 TTGTGCGGTGTTCCATAG 119192 ||| |||| |||||| || Sbjct 126210 TTGCGCGGAGTTCCAAAG 126227 >seq5516 Length=367667 Score = 100 bits (110), Expect = 3e-16 Identities = 302/459 (66%), Gaps = 8/459 (2%) Strand=Plus/Plus Query 16193 AACATTAGACACG-CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGA 16251 ||||| || |||| | |||||||| || || || ||||||| | |||||| |||||||| Sbjct 269976 AACATCAG-CACGGCAAAGTCGCAGTGAAGGCCCTCGTCTCGGGAGATAAGCTCGTTGGA 270034 Query 16252 AAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGAC 16309 || || | || ||||| || || ||||| | |||||| || | || || || | Sbjct 270035 GAAGGTCAGTCCCGGCATCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCC 270094 Query 16310 CCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCA 16369 | ||| ||| || ||||| || | || || || || | || || || | | || Sbjct 270095 GCTGAA--GAAGATGCCCTCGACGGCAGCGAAGGCAATGATGCGCTCTCCGAAATTGGCC 270152 Query 16370 TCTTTATTACGA-ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGT 16428 || | || ||||| | |||| || || || | || | | |||||| Sbjct 270153 GACTTGG-AGGAGATCCAGGAAAGAGCCCAGTCCGCCTTGCGCTTCACAGCCGGCATCGT 270211 Query 16429 TTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAG 16488 || ||||| || |||| | || | || || || || || || ||||| Sbjct 270212 CTCGATGGCGTTGAACAGGTATTCCCGCTGGTGCGGGTCCCGGATGTATGTGTCGATCAG 270271 Query 16489 TAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCG 16548 | ||||||||| || ||||| | |||||| ||||| || || || || |||||||| || Sbjct 270272 CACACTGTACATCTCCGAGTGCACGTTCTCCATGGCGATTTGGAAGCCGTAGAAGCAGCG 270331 Query 16549 AGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACC 16608 ||||||| || || || ||| | || || || ||||||||||||| ||||| || Sbjct 270332 TGCCTCCGTGATCTGAACCTCCTGGCTGAAGCGCTCGACCAGGTTCTCATTTACGATGCC 270391 Query 16609 GTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || || || || || |||| | |||| ||||| Sbjct 270392 ATCGGAGGCGGCGAAGAAGGCCAGCACGTGCGAGATGAA 270430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511377750765560