Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5134 255 7e-63 >seq5134 Length=897107 Score = 255 bits (282), Expect = 7e-63 Identities = 1186/1870 (63%), Gaps = 28/1870 (1%) Strand=Plus/Plus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 || |||| |||||| || || | | | || || || || || || || ||||| || Sbjct 539121 TTATCCACTGTGAACTGGATAGCATTTGCAGCCGGCTTTGTGCGCAGGTAATACATCCCT 539180 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||| ||||| |||| ||||| || || || || || ||| |||| Sbjct 539181 GTTTTGAGACCAGCTTTCCAGGAATAAAAGTGTATGGACGTCAGCTTTCCGTAATTCGGC 539240 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 ||||| | ||| ||||| | || ||||| || || ||||| || |||| ||||| ||| Sbjct 539241 TCTGCCACATGAATATTGAACGACTGACTCTGGTCTATGAACGCACCCCGATCTGCGGCC 539300 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 53037 ||||| ||| | | ||| | |||||||| | || || || | |||| | | Sbjct 539301 ATTTTAATGGTGGACTTCACCGAGATTTCCCACACGGTCTTGTACAGATCGCGAAC---C 539357 Query 53038 TTCTGG---AAGGTTTG--TATTCTGAATAGATCCACCA-TCTACCATAATCCTATTCTT 53091 |||||| | || | |||| || || || || | || | || ||| ||||| Sbjct 539358 TTCTGGGGAATGGACTCGATATTTTGGATGGAGCCCCTGCTCGAG-ATGATCTGGTTCTT 539416 Query 53092 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 53151 || || || | ||| || | ||| |||| | || || | ||| | ||||| || Sbjct 539417 CATGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTCAGCAAATGATGGTTAACCAC 539476 Query 53152 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 53211 || || || ||||||| || | || ||||||||||| |||| || || || | || Sbjct 539477 CTGGAACTCGCCAGACAGCACGCGCCTGGTGTAAATATTTGTGGTGTAGGGCTCGAAGGA 539536 Query 53212 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 53271 || || || |||| || |||||||| || || || ||||| || || || | | Sbjct 539537 TTCGTTGTTGCCCATTATCTGAGCAGTAGAGGCCGTGGGCATGGGAGCGACAAGCAGGGA 539596 Query 53272 ATTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 53330 || | | ||||| || | |||| || || || || ||| | ||| |||| || Sbjct 539597 GTTCCGGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTTTGCCAGTCCCACAGATTCG 539655 Query 53331 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 53390 || | || ||||| || || || || || | | Sbjct 539656 TTGGCTCCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTCGT 539715 Query 53391 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 53450 | || ||||| |||||||| ||| || ||||| || || || || | || ||||| | Sbjct 539716 AGGTTTCGTAGGGTCCTTCGATCTGCGCCAGTTCGCAGCTGGCTTCCAGGGCGCCGTAGT 539775 Query 53451 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 53510 | ||||| ||||| |||| || || | ||| ||| ||| ||| | || | Sbjct 539776 AGATGGTCTCGAATATCTGCTGGTTCAAGAGGCCTGCCTCCTCGCTTTCATAGGGGAATC 539835 Query 53511 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 53570 | |||||| | ||||| || ||||| |||||||| || || | ||| | ||| ||| Sbjct 539836 GCATGAGAATCAGGGCGTCAGCGAATCCCTGAACACCGATGCCCACAGGGCGATGCCTCA 539895 Query 53571 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGT 53630 || || | | || ||||| | |||||| | || || || || || || ||||| | Sbjct 539896 AGTTGGACTTCTTTGCCTCTGGCAGGGGATAAAAGTTGATGTCGATGATCTTGTTGAGAT 539955 Query 53631 TTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TTGTC-CATCTA 53687 || || | ||| || ||||| || || || ||| | | || | | Sbjct 539956 TTTTGGTCACCGTCTTGGTAACTTCCTTGAGCTTCTTGAAGTCATACGTCTTCTCGGGTG 540015 Query 53688 TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 53747 | |||||||| || | || || || |||| || || ||||| | ||||| || | Sbjct 540016 TGACAAACATATTGAGGGCGATCGAGGCCAAGTTGCAGACGGCAATCTCATCAGGCGAGG 540075 Query 53748 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 53807 || | | || || ||||| | || || ||||||||||| || | ||| || || | Sbjct 540076 AGTACTCGACGATTTCGGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGT 540135 Query 53808 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGG 53867 | ||||| ||| || |||||||| | || ||| | || | |||||||| | ||| | Sbjct 540136 TGCTCTTCCGGTTGCAGGCATCCTTGAACAGCATGTAGGGGTTCCCAGTTTCCACCTGAG 540195 Query 53868 ATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATA-GATTTGTAT--CTCTTTT 53924 || || || || ||| | | ||||||| | | | || | | | || || Sbjct 540196 CCTCAATGATGGCGAACCAAAGGGACTGAGCCTTCACCGTTCGGTTGGCACGACCCTCTT 540255 Query 53925 -CTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 ||| | | | | || |||| | ||| ||||| || ||||| |||| || | || Sbjct 540256 GCTCGTACTTCTCGT----ACAACCTTTCGAACTCATCGCCCCACACATCGTGAAGGCCG 540311 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 54043 || |||| | || ||||| | |||||| || || | ||| || || ||||||||| Sbjct 540312 GGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCGACGCGCTTCATAAAG 540371 Query 54044 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 54103 ||||| || ||||| || || || ||||| | || | | ||||| || || || Sbjct 540372 AGATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGGTTCTCCTCCTTGCCGGTG 540431 Query 54104 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTC 54163 ||||| || || || |||||| | | | || || ||||| || |||| ||| |||| Sbjct 540432 TTCTTCTTCAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCA 540491 Query 54164 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 54223 | | || || || ||| || |||||||| | || | || || || | || Sbjct 540492 AAGGCGCCGGGACGCTTGCCGCCGCCCTGATCCACATAACGTGCCACATTGTTGAAGACC 540551 Query 54224 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 54283 |||| ||| |||| | |||||||| | || || || ||| | || || | || | Sbjct 540552 CTCAGCATGGGAACGAGGCCATTGGAGGTGCCGTTCGTGCCGCAAATCGAGGTGCCCTTC 540611 Query 54284 GCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGC 54341 || || || | | ||| ||| || || || || ||| || ||||| | |||| Sbjct 540612 GCCCGGATGCAGTGGACATT--TAGCCCGATGCCGCCAGCCGACTTCGAGATCATGGCGC 540669 Query 54342 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 54401 | | | | | | | |||||||| || || || ||||| | || || |||| Sbjct 540670 ACTGCTCCACGGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTGAGGAGGAAAC 540729 Query 54402 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 54461 | |||| || | ||| | || | || ||| | || || || || || || | Sbjct 540730 ACGAGGACAGCTGCGGCCGATTCGTGGCAGCGGCAAAAAGTGTGGGCGACGCATGGGTGA 540789 Query 54462 ACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAA 54521 | | || || | ||||| ||||| || | |||| || |||||| || | Sbjct 540790 AGTAACGCTCCGACAAGAGATTATACGTTTCCACGGCTGCATCGATATCCTCCCCGTGTA 540849 Query 54522 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 54581 |||| | || || ||||| | ||||||||| || | || |||||||| |||| | | Sbjct 540850 TTCCGATCGCCACGCGCATCAGCATGTGCTGCGGGCGCTCGGCGATCTTGCCGTTTCTCT 540909 Query 54582 TCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 54641 ||||||| ||||| ||| | || || || ||||| |||||||| |||||| || | Sbjct 540910 TCAGCAAATAGGAACGTTCGAGGGTCTTGAACCCAAAGTAGTTGTACCCAAAGTCGCGAT 540969 Query 54642 CGTAAATAAT 54651 ||||||| || Sbjct 540970 CGTAAATTAT 540979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593679052425840