Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3746 134 1e-26 seq4881 125 6e-24 seq4121 122 7e-23 seq5136 107 2e-18 seq5134 105 6e-18 >seq3746 Length=358675 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| || |||||||| || ||||| ||||| | | Sbjct 174170 CCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 174229 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||||||||| ||||| || | || || | |||||| ||| ||| Sbjct 174230 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGG 174289 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | ||| || || |||||| Sbjct 174290 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACC 174349 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | ||||| ||||| |||||||| Sbjct 174350 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 174396 >seq4881 Length=334723 Score = 125 bits (138), Expect = 6e-24 Identities = 232/336 (69%), Gaps = 11/336 (3%) Strand=Plus/Plus Query 23617 CCAATGATGCCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAGCGGGTGC 23676 || |||| ||||||||| | ||| |||||| |||||||||| |||||| ||| ||| Sbjct 296747 CCGATGACGCCGCAGCCAATTCGGGCGCCAGCGTTGCCCGTGGACTTGCTCAGCTCGTGG 296806 Query 23677 TCGCCGAGGCCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCAATATACTC 23736 | || ||| || |||||| || | ||| || |||| | ||||||| | || || Sbjct 296807 CCACCCTTGCCGAGATCATCGGCATCGGCGTGGACCACCACGGTGCGGCCGATGATGCTG 296866 Query 23737 AACGGC-CCAAACAGGGTTATCACGTTGTCGCTCATGTGTATGGCCGTGAGTGCGGTGCA 23795 |||| || || || || ||| | |||| | ||| || || || | || ||| Sbjct 296867 T-CGGCGCCGAAAAGCGTGATCTTGGAGTCGGTGATGC---TGACCTTG---GTGGGGCA 296919 Query 23796 GCCCGCAGAGCGCAC---GTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGC 23852 | | | | | | | |||||| |||||||| | ||| || | | || || ||| || Sbjct 296920 GTCGCCGGTGGCCTCAATGTTGCCAAGGTCGCCCAGGTGACGGTTCTCGTCGGTGGGAGC 296979 Query 23853 GCCGTGTCTCTGGCGGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGT 23912 |||||| || || |||| || ||||| || | ||| ||||||||||| || | Sbjct 296980 GCCGTGCTCCTTGCCCTTGGGATTGAAGTGGGGTCCGGACGACATGCAGCCGTTGGTGTT 297039 Query 23913 GTCGCCGAATTCGTGCACGTGAAAACCGTGCAGCCC 23948 ||| ||||| ||||||||||| || |||||||| || Sbjct 297040 GTCCCCGAACTCGTGCACGTGGAAGCCGTGCAGGCC 297075 >seq4121 Length=254077 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| ||||||||| |||||||| || ||||| ||||| | Sbjct 189495 CCACCACGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGAT 189554 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||||||| ||||| || |||| || | |||||| || ||| Sbjct 189555 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGG 189614 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | ||| |||||| ||||| Sbjct 189615 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCGATGGTATCAGAAGGCTCAACC 189674 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| ||||| || || || || || || ||||| Sbjct 189675 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 189721 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| ||||||||| |||||||| || ||||| ||||| | Sbjct 189951 CCACCACGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGAA 190010 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||||||| ||||| || | || | | |||||| || || Sbjct 190011 AGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 190070 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | ||| |||||| ||| || Sbjct 190071 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCAGAGGGTTCAACC 190130 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || | || ||||| || || ||||| Sbjct 190131 TCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 190177 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||||||||||| || |||||||| || | | Sbjct 190179 CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGAC 190238 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | ||||||||||||| || || || | || || | |||||| || || Sbjct 190239 AAGGTGCGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGG 190298 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | ||| ||||| ||| || Sbjct 190299 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGGTTCGACC 190358 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||| || ||||||||||| || || || || ||||| |||||||||||| Sbjct 190359 TCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATTTGCATTTTG 190409 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||||||||||| || |||||||| || | | Sbjct 189267 CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGAC 189326 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | ||||||||||||| || || || | || || | |||||| || || Sbjct 189327 AAGGTGCGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGG 189386 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | | ||||| |||||| Sbjct 189387 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAGGGCTCAACC 189446 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||||||||| ||||| | || || || || || ||||| Sbjct 189447 TCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189493 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| ||||||||| |||||||| || ||||| ||||| | Sbjct 189039 CCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGAT 189098 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||||||| || || || | || | | |||||| || || Sbjct 189099 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 189158 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | | ||||| ||||| Sbjct 189159 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCGACC 189218 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || | || ||||| || || ||||| Sbjct 189219 TCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGACGAAGATCTGCAT 189265 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | |||||||| || | || ||||||||||| |||||||| || | Sbjct 189723 CCTCCTCGAAGACGGAGCACCAAGTGGAGGGTTGACTCCTTTTGGATGTTATAATCGGAT 189782 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || |||||||| ||||| || | || | | |||||| || ||| Sbjct 189783 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 189842 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | | ||||| ||| || Sbjct 189843 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGGAGGGTTCGACC 189902 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||||||||| ||||| | || || || || || ||||| Sbjct 189903 TCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189949 >seq5136 Length=173398 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | |||||||| ||||||||||||||||| || ||||| ||||| | Sbjct 114977 TTCCTCCGCGAAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGG 115036 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| || | |||||||||| || || || || | || || | |||||| || || Sbjct 115037 ACAGAGTACGTCCGTCCTCCAGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGG 115096 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || ||||| || |||||| || || | ||| || || ||||| Sbjct 115097 GAATTCCCTCCTTATCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGCTCGA 115156 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||| ||||| || ||||| || || || || || |||||||| Sbjct 115157 CTTCCAGGGTGATGGTTTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 115205 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||||||||||||||||| || ||||| ||||||| Sbjct 115207 CCTCCACGGAGGCGGAGAACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGAA 115266 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || || ||||| || || || | || | | |||||| || ||| Sbjct 115267 AGGGTGCGTCCATCTTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 115326 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || ||||| | ||| |||||| ||| || Sbjct 115327 ATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCGATGGTATCAGAGGGTTCGACC 115386 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || || || || || ||||| ||||| Sbjct 115387 TCCAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACGAATATCTGCAT 115433 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||| |||| |||||||||||||| || || |||||||| || | Sbjct 116117 TTCCTCCACGAAGACGGAGAACCAAGTGCAAAGTGGACTCTTTCTGGATGTTATAATCGG 116176 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| | ||||||||| ||||| || ||| | || | || |||||| || || Sbjct 116177 ACAGGGTGCGTCCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGG 116236 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||| || ||| || ||||| | ||| ||||| ||| || Sbjct 116237 GGATTCCTTCCTTATCCTGGATTTTAGCCTTCACATTCTCGATGGTATCGGAGGGTTCGA 116296 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| ||||| || || || | || || ||||| || |||||| Sbjct 116297 CCTCCAAGGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAGATCTGCATT 116346 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||| | ||||| ||||| || ||||| ||||| | | Sbjct 116803 CCTCCGCGGAGACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 116862 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || || ||||| || || || | || | || ||||||||| ||| Sbjct 116863 AGGGTGCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGA 116922 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || |||||| ||||| | | | ||||| |||||| Sbjct 116923 ATACCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCCACC 116982 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAAT 21182 |||| ||| ||||||||||| || || || || ||||| || ||||| ||| || Sbjct 116983 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATGTTGGAT 117036 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | ||| | ||||||||||| |||||||| ||||| | Sbjct 116575 CCACCGCGCAGACGGAGGACTAAATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAA 116634 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | |||||||||| |||||||| || | || | || |||||| || ||| Sbjct 116635 AGAGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGA 116694 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||| || || || | | | || || ||||| Sbjct 116695 ATTCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGTGTCTGAAGGCTCAACC 116754 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||| ||||| || | || || ||||| || ||||| Sbjct 116755 TCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 116801 >seq5134 Length=897107 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||||||||||||||||| |||||||||||||| | Sbjct 635933 CCACCACGCAGGCGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 635874 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| || | || || | |||||| || || Sbjct 635873 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 635814 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||||| ||| || | ||| |||||| || || Sbjct 635813 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACC 635754 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || ||||||||||| || | || || || || || ||||| ||| Sbjct 635753 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTG 635703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422229696353828