Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq5134 136 8e-27 >seq5134 Length=897107 Score = 136 bits (150), Expect = 8e-27 Identities = 517/791 (65%), Gaps = 39/791 (5%) Strand=Plus/Minus Query 249277 TTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAG 249336 || ||||| || |||| |||||| | || | || ||||||||||| |||| ||| Sbjct 540493 TTTGCCATTTACCTGGAGCCCTGGCACTCGGACGTCTTTGAGTTCCTGGAACTGAAGAAG 540434 Query 249337 AACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGAC 249396 |||| |||||| ||| | | || || || || ||||||| ||||||| | |||| Sbjct 540433 AACACCGGCAAGGAGGAGAACCGCGCCCGCGATCTGTTCTACGCCCTGTGGATACCCGAT 540374 Query 249397 TTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTT-CTCCGTCCGACGC 249455 | || ||| |||||| ||||| | ||||||||| |||| | | | || | | || Sbjct 540373 CTCTTTATGAAGCGCGTCGAGGCCAATGGCGATTGGTCGCTCATGTGCCCCCACAAATGC 540314 Query 249456 CCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGAA 249513 ||||| | ||| |||| | |||| || ||||| ||| | || |||| ||||| Sbjct 540313 CCCGGCCTTCA-CGATGTGTGGGGCGATGAGTTCGA--AAGGTTGTACGAGAAGTACGAG 540257 Query 249514 TCCAACGGCATCGG--CAAGACAA---TCAAGGCTCGGACCCTTT---TTGCGAAGGTGG 249565 ||| | ||| ||| || | ||||||| | |||||| | || | | Sbjct 540256 --CAAGAGGGTCGTGCCAACCGAACGGTGAAGGCTCAGTCCCTTTGGTTCGCCA---TCA 540202 Query 249566 TGGAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCA 249625 | ||| | ||| | || || ||| || || ||||||| || || |||||| | Sbjct 540201 TTGAGGCTCAGGTGGAAACTGGGAACCCCTACATGCTGTTCAAGGATGCCTGCAACCGGA 540142 Query 249626 AGAGTAACCAACGGCATCTTGGTACCATCCGCT-CGTCAAATCTCTGTGCA--GAGGTGA 249682 |||| ||||| | | || | || |||||| | | ||| | |||||| || | Sbjct 540141 AGAGCAACCAGCAGAATGTCGGCACCATCAAGTGCAGCAACT---TGTGCACCGAAATCG 540085 Query 249683 TTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCAAGCATCAATCTCGTGA 249742 | | ||||| || || |||||||||||||||||| |||| ||| ||| | Sbjct 540084 TCGAGTACTCCTCGCCTGATGAGATTGCCGTCTGCAACTTGGCCTCGATCGCCCTCAATA 540025 Query 249743 GGCACGTGAGGGCGGACAGGACGTTCGACTTCGAGCGTCTTCACCGGACGG--CGAAACA 249800 | || | | || | ||||| |||||| || || | ||| | | || Sbjct 540024 TGTTTGTCACACCCGAGAAGACGTATGACTTCAAGAAGCTCAA--GGAAGTTACCAAGAC 539967 Query 249801 GGCGATCAAAAACCTCAACAAGGTGATTGATGTCAATTTTTACCCCCTT---GAGGAATG 249857 || || |||||| ||||||||| | || || |||| ||||| ||||| |||| | Sbjct 539966 GGTGACCAAAAATCTCAACAAGATCATCGACATCAACTTTTATCCCCTGCCAGAGGCA-- 539909 Query 249858 CAGGTTGTCCAACATGAAGCACCGTCCATGTGGGC-TGGGCGTTCAGGCACTGCACGACG 249916 | | ||||||| ||| ||| || || ||||||| | || ||||||| | | |||| Sbjct 539908 -AAGAAGTCCAACTTGAGGCATCGCCC-TGTGGGCATCGGTGTTCAGGGATTCGCTGACG 539851 Query 249917 TCTACATGGTGATGGGATTCCCCTTCGAGTCAGAGGAGGCAGCGACGCTA-AATAAACAG 249975 | || | ||| ||||||||| || |||||||||| | | || || | ||| Sbjct 539850 CCCTGATTCTCATGCGATTCCCCTATGAAAGCGAGGAGGCAG-GCCTCTTGAACCAGCAG 539792 Query 249976 ATTTTCGAGACCATCTATCACGGGAGCGTCGAGGCGTCCATCGAAAGGGCCAAGATCGAC 250035 || |||||||||||||| |||| | | || || | |||| ||| ||||||| Sbjct 539791 ATATTCGAGACCATCTACTACGGCGCCCTGGAAGCCAGCTGCGAACTGGCGCAGATCGAA 539732 Query 250036 GGACCATACGA 250046 ||||| ||||| Sbjct 539731 GGACCCTACGA 539721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073687527495744