Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3746 145 6e-30 seq5136 132 4e-26 seq4121 116 3e-21 >seq3746 Length=358675 Score = 145 bits (160), Expect = 6e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 174188 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 174247 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| || || || || | |||||||||||| Sbjct 174248 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGG 174307 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||||| | ||||||||||| ||| || |||||| Sbjct 174308 ATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTG 174367 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || || || |||||||||||||||||| || Sbjct 174368 CCGGTGAGGGTTTTCACAAAGATTTGCATGGTG 174400 >seq5136 Length=173398 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || ||| |||||||| |||||||||||| ||| ||| | || || Sbjct 116821 ACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCG 116880 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| ||||| ||||| ||||| || || | ||||||||| ||| Sbjct 116881 AGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGG 116940 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || | ||||||||||| ||| || |||||| Sbjct 116941 ATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTG 117000 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || |||| |||||||||||||| ||||||||| Sbjct 117001 CCAGTCAAGGTCTTCACAAAGATCTGCATGTTG 117033 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 || || || || ||| ||||||||||||||||||||| || ||| |||| ||| Sbjct 116593 ACTAAATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGTCCGTCCTCC 116652 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| |||||||| ||||| ||||| || || || || | |||||||||||| Sbjct 116653 AGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 116712 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| | ||| ||||||| ||| || || ||| Sbjct 116713 ATTTTAGCCTTGACGTTTTCAATGGTGTCTGAAGGCTCAACCTCCAGGGTGATGGTTTTG 116772 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || |||||||||||||| |||||| Sbjct 116773 CCAGTGAGGGTCTTCACAAAGATCTGCATG 116802 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| ||| ||||||||| |||||||||||| ||| || |||| ||| Sbjct 114997 ACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCC 115056 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| ||||||||||| || | ||||| || || || || | |||||||| ||| Sbjct 115057 AGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGG 115116 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||| || |||| ||| || || || Sbjct 115117 ATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGCTCGACTTCCAGGGTGATGGTTTTT 115176 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| ||||||||| |||||||||||| Sbjct 115177 CCGGTCAAAGTCTTCACGAAGATTTGCATG 115206 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| ||| ||||||||| ||||||||||| || ||| | || || Sbjct 115225 ACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGTCCATCTTCA 115284 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| ||||| ||||| || || || || | ||||||||||| Sbjct 115285 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGG 115344 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | | | || || ||||||| ||| || |||||| Sbjct 115345 ATTTTAGCCTTCACATTCTCGATGGTATCAGAGGGTTCGACCTCCAGGGTGATGGTCTTG 115404 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||| || || ||||| Sbjct 115405 CCAGTCAAAGTCTTCACGAATATCTGCAT 115433 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| |||||||| ||| ||| ||| |||| ||| Sbjct 115909 ACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCC 115968 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| || ||||| || | ||||| || || ||||| | ||||||||||| Sbjct 115969 AGTTGTTTGCCAGCGAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCTTGG 116028 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||| || |||| ||| || ||||| Sbjct 116029 ATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGCTCGACTTCCAGGGTGATGGTCTTT 116088 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||| ||||| ||||| Sbjct 116089 CCGGTCAAAGTCTTCACGAAGATCTGCAT 116117 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| ||||| || ||| ||| || | || || Sbjct 115681 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAATCGGACAGAGTACGTCCATCTTCA 115740 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||||||||| ||||| ||||| ||||| || || | || ||||| ||| | Sbjct 115741 AGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCCTGA 115800 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||| | || || |||||| Sbjct 115801 ATCTTAGCCTTGACGTTTTCGATGGTGTCTGAAGGCTCAACCTCAAGAGTGATGGTCTTG 115860 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||||||||| Sbjct 115861 CCAGTCAAGGTCTTGACGAAGATTTGCAT 115889 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| ||| ||| ||||| ||||| || ||| ||| ||| |||| ||| Sbjct 116137 ACCAAGTGCAAAGTGGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGTCCGTCCTCC 116196 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | |||||||||||| || ||||| ||||| || || || || | || ||||| ||| Sbjct 116197 AATTGTTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTATCCTGG 116256 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | | | || || ||||||| ||| || || || Sbjct 116257 ATTTTAGCCTTCACATTCTCGATGGTATCGGAGGGTTCGACCTCCAAGGTGATGGTTTTT 116316 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||||||||| ||||| Sbjct 116317 CCAGTGAGGGTCTTCACAAAGATCTGCAT 116345 >seq4121 Length=254077 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| ||||| || ||| || ||| |||| ||| Sbjct 189285 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTGCGTCCGTCCTCC 189344 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| |||| ||||| || || ||||| | |||||||||||| Sbjct 189345 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 189404 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || ||| ||||| | |||||| ||||| Sbjct 189405 ATCTTGGCCTTCACATTCTCAATGGTATCGGAGGGCTCAACCTCAAGGGTAATGGTCTTT 189464 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||| ||||| ||||| Sbjct 189465 CCGGTCAGAGTCTTCACGAAGATCTGCAT 189493 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| ||||| || ||| || ||| |||| ||| Sbjct 190197 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTGCGTCCGTCCTCC 190256 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| |||| ||||| || || ||||| | |||||||||||| Sbjct 190257 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 190316 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || || ||||||| || || |||||| Sbjct 190317 ATCTTAGCCTTGACATTCTCGATGGTATCGGAGGGTTCGACCTCCAAAGTGATGGTCTTG 190376 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 || |||| |||||||||||| |||||||| ||| || Sbjct 190377 CCAGTCAAAGTCTTCACAAAAATTTGCATTTTGGCT 190412 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| |||| || ||||||||| |||||||||||| || ||| | || ||| Sbjct 189057 ACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGATAGAGTGCGTCCATCCTCC 189116 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| ||||| ||||| || || ||||| | ||||||||||| Sbjct 189117 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCTTGG 189176 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || ||| ||||||| || || |||||| Sbjct 189177 ATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAAGTGATGGTCTTG 189236 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || |||||||| || ||||| |||||| Sbjct 189237 CCAGTAAGAGTCTTGACGAAGATCTGCATG 189266 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| |||| || ||||||||| ||||||||||| || ||| |||| ||| Sbjct 189969 ACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCGTCCTCC 190028 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| ||||| ||||| || || ||||| | |||||||||||| Sbjct 190029 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 190088 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || || ||||||| || || |||||| Sbjct 190089 ATCTTGGCCTTCACATTCTCGATGGTATCAGAGGGTTCAACCTCCAAAGTGATGGTCTTG 190148 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||| || ||||| |||||| Sbjct 190149 CCAGTCAGGGTCTTGACGAAGATCTGCATG 190178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395047595725393