Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq5516 150 4e-31 seq5503 89.7 1e-12 seq5134 89.7 1e-12 >seq5516 Length=367667 Score = 150 bits (166), Expect = 4e-31 Identities = 300/442 (68%), Gaps = 7/442 (2%) Strand=Plus/Minus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 ||||||| ||||| || || || |||||||| || || ||||| |||||||||||| Sbjct 270129 TTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGC 270070 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | ||||| | ||| | |||| || || |||| |||||| ||| | || || | |||| Sbjct 270069 TGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTCCAACGAGCTTATCTCCCGAGACG 270010 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTT--TGTTGATACCCC 102096 | || ||||| |||||||||| | ||||| || || || || | ||||| Sbjct 270009 AGGGCCTTCACTGCGACTTTGC---CGTGCTGATGTTCCAGCACTTGGTGCAGCGACCCC 269953 Query 102097 ATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156 | | || | || |||| || || || || || |||||||| || || || Sbjct 269952 GCC--GCGAGCGCATCATTGAGATCATCCGAGATGCAGTGGCCATTGAACAGGAGTTCCT 269895 Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216 ||| | | ||||||| || || | | || ||||| ||| | ||||| |||||||| Sbjct 269894 CACCGATGCCCTGCCCGTGAACCTCATCGGCATGAATTGCGATCTGATGTCGCAGTACAT 269835 Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTAC 102276 || || ||||| ||| | |||| ||| |||| | | ||| ||| ||| | Sbjct 269834 CGAGTTCGTGGCGGATCGCTTGCTGGTGGAATTGGGCGTCGGCAAGATCTACAATACGAA 269775 Query 102277 CAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAA 102336 ||||||||| |||||||| | || || || || ||||||||||| ||||| || Sbjct 269774 GAACCCCTTCAACTTCATGGAGATGATCTCGCTGGACGGCAAGACCAACTTCTTTGAGAA 269715 Query 102337 GAGAGTCGCCGAGTATCAACGT 102358 || || | |||||| || ||| Sbjct 269714 GAAGGTGGGCGAGTACCAGCGT 269693 >seq5503 Length=77054 Score = 89.7 bits (98), Expect = 1e-12 Identities = 243/367 (66%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 35405 GGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCC 35464 || || || || || ||||| ||||||||||| || || || || | ||||| | Sbjct 66736 GGCCCGGTGTATGGCTTCCAGTGGCGTCATTTCGGGGCGGAGTACGGCACCTGCGACGAC 66677 Query 35465 GATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA-AA 35523 |||| | || ||||| || || || || | | | | | || | | |||| || Sbjct 66676 AATTACAGCGGCAAGGGCATCGACCAGCTGCGCCAGGTGATCGACACTATCA-AGAATAA 66618 Query 35524 TCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGC 35583 ||| || || | || || ||| |||| |||||||| |||| | | | ||||| Sbjct 66617 TCCCTCGGACAGGCGCATCATCATGTCGGCCTGGAATCCGCTGGACATACCCAAGATGGC 66558 Query 35584 TCTTCCTCCATGCCACATGACTG-CTCAATTTTATGTGGCTAAT------GGAGAATTGT 35636 || || || |||||| || ||| | || || || || | | || || | | Sbjct 66557 CCTGCCGCCGTGCCAC-TGCCTGGCCCAGTTCTACGTCTCACAGACGCGCGGCGAGCTCT 66499 Query 35637 CGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCAT 35696 | |||||| |||| ||||| |||| || | || |||||||||||||||| || || | Sbjct 66498 CCTGCCAGCTGTACCAGCGGAGCGCCGACATGGGCCTGGGCGTGCCCTTCAACATCGCCT 66439 Query 35697 CATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTA 35756 | ||| | || || || || |||| ||| | || |||||||||||| ||||| ||| Sbjct 66438 CCTACGCCCTGCTCACCCACATGATCGCCCATGTGACGGGTCTAAAACCAGGAGACTTTG 66379 Query 35757 TCCTCAC 35763 | | ||| Sbjct 66378 TACACAC 66372 >seq5134 Length=897107 Score = 89.7 bits (98), Expect = 1e-12 Identities = 243/367 (66%), Gaps = 10/367 (3%) Strand=Plus/Plus Query 35405 GGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCC 35464 || || || || || ||||| ||||||||||| || || || || | ||||| | Sbjct 890512 GGCCCGGTGTATGGCTTCCAGTGGCGTCATTTCGGGGCGGAGTACGGCACCTGCGACGAC 890571 Query 35465 GATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA-AA 35523 |||| | || ||||| || || || || | | | | | || | | |||| || Sbjct 890572 AATTACAGCGGCAAGGGCATCGACCAGCTGCGCCAGGTGATCGACACTATCA-AGAATAA 890630 Query 35524 TCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGC 35583 ||| || || | || || ||| |||| |||||||| |||| | | | ||||| Sbjct 890631 TCCCTCGGACAGGCGCATCATCATGTCGGCCTGGAATCCGCTGGACATACCCAAGATGGC 890690 Query 35584 TCTTCCTCCATGCCACATGACTG-CTCAATTTTATGTGGCTAAT------GGAGAATTGT 35636 || || || |||||| || ||| | || || || || | | || || | | Sbjct 890691 CCTGCCGCCGTGCCAC-TGCCTGGCCCAGTTCTACGTCTCACAGACGCGCGGCGAGCTCT 890749 Query 35637 CGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCAT 35696 | |||||| |||| ||||| |||| || | || |||||||||||||||| || || | Sbjct 890750 CCTGCCAGCTGTACCAGCGGAGCGCCGACATGGGCCTGGGCGTGCCCTTCAACATCGCCT 890809 Query 35697 CATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTA 35756 | ||| | || || || || |||| ||| | || |||||||||||| ||||| ||| Sbjct 890810 CCTACGCCCTGCTCACCCACATGATCGCCCATGTGACGGGTCTAAAACCAGGAGACTTTG 890869 Query 35757 TCCTCAC 35763 | | ||| Sbjct 890870 TACACAC 890876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989511311035015