Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5134 242 5e-59 >seq5134 Length=897107 Score = 242 bits (268), Expect = 5e-59 Identities = 1184/1870 (63%), Gaps = 28/1870 (1%) Strand=Plus/Plus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 || |||| |||||| || || | | | || || || || || || || ||||| || Sbjct 539121 TTATCCACTGTGAACTGGATAGCATTTGCAGCCGGCTTTGTGCGCAGGTAATACATCCCT 539180 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| ||||| |||| ||||| || || ||| || || ||| |||| Sbjct 539181 GTTTTGAGACCAGCTTTCCAGGAATAAAAGTGTATGGACGTCAGCTTTCCGTAATTCGGC 539240 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 ||||| | ||| ||||| | || ||||| || || ||||| || |||| ||||| ||| Sbjct 539241 TCTGCCACATGAATATTGAACGACTGACTCTGGTCTATGAACGCACCCCGATCTGCGGCC 539300 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 62275 ||||| ||| | | ||| | |||||||| | || || || | |||| | | Sbjct 539301 ATTTTAATGGTGGACTTCACCGAGATTTCCCACACGGTCTTGTACAGATCGCGAAC---C 539357 Query 62276 TTCTGG---AAGGTTTG--TATTCTGAATGGATCCACCA-TCTACCATAATCCTATTCTT 62329 |||||| | || | |||| || ||||| || | || | || ||| ||||| Sbjct 539358 TTCTGGGGAATGGACTCGATATTTTGGATGGAGCCCCTGCTCGAG-ATGATCTGGTTCTT 539416 Query 62330 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTAC 62389 || || || | ||| || | ||| |||| | || || | ||| ||||||| || Sbjct 539417 CATGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTCAGCAAATGATGGTTAACCAC 539476 Query 62390 TTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGA 62449 ||||| || ||||||| || | || ||||||||||| |||| || || || | || Sbjct 539477 CTGGAACTCGCCAGACAGCACGCGCCTGGTGTAAATATTTGTGGTGTAGGGCTCGAAGGA 539536 Query 62450 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62509 || || || |||| || |||||||| || || || ||||| || || || | | Sbjct 539537 TTCGTTGTTGCCCATTATCTGAGCAGTAGAGGCCGTGGGCATGGGAGCGACAAGCAGGGA 539596 Query 62510 ATTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCG 62568 || | | ||||| || | |||| || || || | || ||| | ||| |||| || Sbjct 539597 GTTCCGGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTTTGCCAGTCCCACAGATTCG 539655 Query 62569 ACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62628 || | || || ||||| || || || || || | | Sbjct 539656 TTGGCTCCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTCGT 539715 Query 62629 ATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAAT 62688 | || || || |||||||| ||| || |||| || || || || | || ||||| | Sbjct 539716 AGGTTTCGTAGGGTCCTTCGATCTGCGCCAGTTCGCAGCTGGCTTCCAGGGCGCCGTAGT 539775 Query 62689 AAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 62748 | ||||| || || |||| || || | ||| ||| ||| ||| | || | Sbjct 539776 AGATGGTCTCGAATATCTGCTGGTTCAAGAGGCCTGCCTCCTCGCTTTCATAGGGGAATC 539835 Query 62749 TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62808 | |||||| | ||||| || ||||| |||||||| || || | ||| | ||| ||| Sbjct 539836 GCATGAGAATCAGGGCGTCAGCGAATCCCTGAACACCGATGCCCACAGGGCGATGCCTCA 539895 Query 62809 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62868 || || | | || ||||| | |||||| | || || || || || || ||||||| Sbjct 539896 AGTTGGACTTCTTTGCCTCTGGCAGGGGATAAAAGTTGATGTCGATGATCTTGTTGAGAT 539955 Query 62869 TTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC---TA 62925 || || | ||| || ||||| || || || ||| | | || | Sbjct 539956 TTTTGGTCACCGTCTTGGTAACTTCCTTGAGCTTCTTGAAGTCATACGTCTTCTCGGGTG 540015 Query 62926 TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCG 62985 | |||||||| || | || | || |||| || || ||||| | ||||| || | Sbjct 540016 TGACAAACATATTGAGGGCGATCGAGGCCAAGTTGCAGACGGCAATCTCATCAGGCGAGG 540075 Query 62986 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 63045 || | | || || ||||| | || || |||||||| || || | ||| || || | Sbjct 540076 AGTACTCGACGATTTCGGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGT 540135 Query 63046 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63105 | ||||| ||| || |||||||| | || ||| | || | |||||||| | ||||| Sbjct 540136 TGCTCTTCCGGTTGCAGGCATCCTTGAACAGCATGTAGGGGTTCCCAGTTTCCACCTGAG 540195 Query 63106 ATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTC 63163 || || || || ||| | | ||| ||||||| | | | || | | || | Sbjct 540196 CCTCAATGATGGCGAACCAAAGGGACT-GAGCCTTCACCGTTCGGTTGGCACGACC---C 540251 Query 63164 TCTT--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221 |||| ||||| ||||| | ||||||||| || ||||| |||| || | | Sbjct 540252 TCTTGCTCGTACTTCTCGTACAACCTTTCGAACTCATCGCCCCACACATCGTGAAGGCCG 540311 Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 || |||| | || ||||| | |||||| || || | ||| || || ||||||||| Sbjct 540312 GGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCGACGCGCTTCATAAAG 540371 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 ||||| || ||||| || || || ||||| | | | | ||||| || || || Sbjct 540372 AGATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGGTTCTCCTCCTTGCCGGTG 540431 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 ||||| || || || |||||| | | | || || ||||| || |||| ||| ||||| Sbjct 540432 TTCTTCTTCAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCA 540491 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | | || || || ||| || |||||||| | || | || || || | || Sbjct 540492 AAGGCGCCGGGACGCTTGCCGCCGCCCTGATCCACATAACGTGCCACATTGTTGAAGACC 540551 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 |||| ||| |||| | || || || | || || || ||| | || || || | Sbjct 540552 CTCAGCATGGGAACGAGGCCATTGGAGGTGCCGTTCGTGCCGCAAATCGAGGTGCCCTTC 540611 Query 63522 GCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 || || || | | ||| ||| || || || || ||| || ||||| | |||| Sbjct 540612 GCCCGGATGCAGTGGACATT--TAGCCCGATGCCGCCAGCCGACTTCGAGATCATGGCGC 540669 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639 | | | | | | | ||||| || ||| || | ||||| | || || |||| Sbjct 540670 ACTGCTCCACGGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTGAGGAGGAAAC 540729 Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 | |||| || | ||| | || | || ||| | || || || || || || | Sbjct 540730 ACGAGGACAGCTGCGGCCGATTCGTGGCAGCGGCAAAAAGTGTGGGCGACGCATGGGTGA 540789 Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63759 | | || || | ||||| ||||| || | |||| || |||||| || | Sbjct 540790 AGTAACGCTCCGACAAGAGATTATACGTTTCCACGGCTGCATCGATATCCTCCCCGTGTA 540849 Query 63760 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTT 63819 |||| | || || ||||| | ||||||||| || | || | || ||| |||| | | Sbjct 540850 TTCCGATCGCCACGCGCATCAGCATGTGCTGCGGGCGCTCGGCGATCTTGCCGTTTCTCT 540909 Query 63820 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63879 ||| ||| ||||| ||| | || || || ||||| |||||||| |||||| || | Sbjct 540910 TCAGCAAATAGGAACGTTCGAGGGTCTTGAACCCAAAGTAGTTGTACCCAAAGTCGCGAT 540969 Query 63880 CGTAAATAAT 63889 ||||||| || Sbjct 540970 CGTAAATTAT 540979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629772465696240