Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq5503 221 1e-52 seq5134 221 1e-52 >seq5503 Length=77054 Score = 221 bits (244), Expect = 1e-52 Identities = 397/575 (69%), Gaps = 10/575 (2%) Strand=Plus/Plus Query 20781 ACGGCCATCTCCATCTCTATGTGGGGATGGGGGTCGTAGCCCTCGAGACTCAGA-TCCGC 20839 |||||||| ||||||| || | ||||| || | |||||| ||| |||| | ||| | Sbjct 66186 ACGGCCATTTCCATCTTGATCTTGGGATATGGATTGTAGCCAACGAT-CTCAAAGTCCTC 66244 Query 20840 GC-GCGTAAAGTCCTCCAGACGCGCCACCTTTCTCAAAATCTTCAGCCGCGGAAACGGAC 20898 | ||| ||| ||||| | | ||||| | | ||| |||| ||||| |||| Sbjct 66245 GAAGCGGAAA-TCCTCGATGTCCTGCACCTGCCGCTTGATCACCAGCTTGGGAAAGGGAC 66303 Query 20899 GCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGT 20958 |||| | | | |||||| |||||| || || || || ||| || || | || Sbjct 66304 GCGGCTTACGCTCCAGCTGCTCTTTCAGGGGCTCCACATGATTTAGGTAGACATGCGTGT 66363 Query 20959 CACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACG 21018 | |||| |||||| ||||||||||| || | || ||||| || || ||||||| | | Sbjct 66364 CGCCCATGGTGTGTACAAAGTCTCCTGGTTTTAGACCCGTCACATGGGCGATCATGTGGG 66423 Query 21019 TCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCT 21078 | || ||||||||| ||||||||| || || || || ||||||||||||||| || || Sbjct 66424 TGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCT 66483 Query 21079 GGTACAGCTGGCAGGACAGCTCCCCCCGAGCC------ACGTAAAACTGACACAAAACGT 21132 |||||||||||||||| ||||| || || | | ||||| ||||| || || Sbjct 66484 GGTACAGCTGGCAGGAGAGCTCGCCGCGCGTCTGTGAGACGTAGAACTGGGCCAGGCAGT 66543 Query 21133 GACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGC 21192 | || || || || |||||| | | |||| || ||||| || |||| | ||||| Sbjct 66544 GGCACGGCGGCAGGGCCATCTTGGGTATGTCCAGCGGATTCCAGGCCGACATGATGATGC 66603 Query 21193 GCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCT 21252 ||| || ||| | || || || | ||| | ||||||||||| | |||| Sbjct 66604 GCCTGTCCGAGGGATTATTCTTGATAGTGTCGATCACCTGGCGCAGCTGGTCGATGCCCT 66663 Query 21253 GACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACC 21312 || ||| ||| ||||| | |||||||||||| ||||| | ||||||||| | Sbjct 66664 TGCCGCTGTAATTGTCGTCGCAGGTGCCGTACTCCGCCCCGAAATGACGCCACTGGAAGC 66723 Query 21313 CGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCC 21347 | |||||||| || || |||||| || ||| ||| Sbjct 66724 CATACACCGGGCCGAGGTCGCCCACGGCGCGCTCC 66758 >seq5134 Length=897107 Score = 221 bits (244), Expect = 1e-52 Identities = 397/575 (69%), Gaps = 10/575 (2%) Strand=Plus/Minus Query 20781 ACGGCCATCTCCATCTCTATGTGGGGATGGGGGTCGTAGCCCTCGAGACTCAGA-TCCGC 20839 |||||||| ||||||| || | ||||| || | |||||| ||| |||| | ||| | Sbjct 891062 ACGGCCATTTCCATCTTGATCTTGGGATATGGATTGTAGCCAACGAT-CTCAAAGTCCTC 891004 Query 20840 GC-GCGTAAAGTCCTCCAGACGCGCCACCTTTCTCAAAATCTTCAGCCGCGGAAACGGAC 20898 | ||| ||| ||||| | | ||||| | | ||| |||| ||||| |||| Sbjct 891003 GAAGCGGAAA-TCCTCGATGTCCTGCACCTGCCGCTTGATCACCAGCTTGGGAAAGGGAC 890945 Query 20899 GCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGT 20958 |||| | | | |||||| |||||| || || || || ||| || || | || Sbjct 890944 GCGGCTTACGCTCCAGCTGCTCTTTCAGGGGCTCCACATGATTTAGGTAGACATGCGTGT 890885 Query 20959 CACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACG 21018 | |||| |||||| ||||||||||| || | || ||||| || || ||||||| | | Sbjct 890884 CGCCCATGGTGTGTACAAAGTCTCCTGGTTTTAGACCCGTCACATGGGCGATCATGTGGG 890825 Query 21019 TCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCT 21078 | || ||||||||| ||||||||| || || || || ||||||||||||||| || || Sbjct 890824 TGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCT 890765 Query 21079 GGTACAGCTGGCAGGACAGCTCCCCCCGAGCC------ACGTAAAACTGACACAAAACGT 21132 |||||||||||||||| ||||| || || | | ||||| ||||| || || Sbjct 890764 GGTACAGCTGGCAGGAGAGCTCGCCGCGCGTCTGTGAGACGTAGAACTGGGCCAGGCAGT 890705 Query 21133 GACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGC 21192 | || || || || |||||| | | |||| || ||||| || |||| | ||||| Sbjct 890704 GGCACGGCGGCAGGGCCATCTTGGGTATGTCCAGCGGATTCCAGGCCGACATGATGATGC 890645 Query 21193 GCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCT 21252 ||| || ||| | || || || | ||| | ||||||||||| | |||| Sbjct 890644 GCCTGTCCGAGGGATTATTCTTGATAGTGTCGATCACCTGGCGCAGCTGGTCGATGCCCT 890585 Query 21253 GACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACC 21312 || ||| ||| ||||| | |||||||||||| ||||| | ||||||||| | Sbjct 890584 TGCCGCTGTAATTGTCGTCGCAGGTGCCGTACTCCGCCCCGAAATGACGCCACTGGAAGC 890525 Query 21313 CGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCC 21347 | |||||||| || || |||||| || ||| ||| Sbjct 890524 CATACACCGGGCCGAGGTCGCCCACGGCGCGCTCC 890490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427746110889840