Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5134 152 5e-32 seq4121 129 6e-25 seq5136 111 2e-19 seq3746 102 8e-17 >seq5134 Length=897107 Score = 152 bits (168), Expect = 5e-32 Identities = 378/568 (67%), Gaps = 13/568 (2%) Strand=Plus/Plus Query 153627 TTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACT 153686 |||| ||| ||||| ||||||||||| |||||| | || || || | | | || | || Sbjct 540027 TTGAGGGCGATCGAGGCCAAGTTGCAGACGGCAATCTCATCAGGCGAGGAGTACTCGACG 540086 Query 153687 ATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGG 153746 ||||| | ||||| |||||||| || || |||| ||| || ||||| || ||| Sbjct 540087 ATTTCGGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCGG 540146 Query 153747 TTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAATA 153806 || || || |||||| | |||||||| || | || ||||| | ||| || || || Sbjct 540147 TTGCAGGCATCCTTGAACAGCATGTAGGGGTTCCCAGTTTCCACCTGAGCCTCAATGATG 540206 Query 153807 GTACGCATCAATGTGACCGCGGGCATT---TGATCG--CGAAACTGGCCCTTGTCTTCGT 153861 | || | ||| | ||| | || || | ||| | || | |||| | |||| Sbjct 540207 G--CGAACCAAAGGGAC--TGAGCCTTCACCGTTCGGTTGGCAC-GACCCTCTTGCTCGT 540261 Query 153862 AGTGTTTGTACCAGTATTCAAACTCATCACCAAACGTATTGTTAAGCTCGGGACATTCGT 153921 | | | |||| | ||| |||||||| || || || || ||| |||| |||| || Sbjct 540262 ACTTCTCGTACAACCTTTCGAACTCATCGCCCCACACATCGTGAAGGCCGGGGCATTTGT 540321 Query 153922 TGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGAA 153981 ||| ||||| || ||||| |||||| | | ||||| |||||| | |||||| | Sbjct 540322 GGGGGCACATGAGCGACCAATCGCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTA 540381 Query 153982 CCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACGCA 154041 ||| ||||||| | ||| ||||| || | || || |||| |||| || Sbjct 540382 TCCACAGGGCGTAGAACAGATCGCGGGCGCGGTTCTCCTCCTTGCCGGTGTTCTTCTTCA 540441 Query 154042 TGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCTT 154101 | | || || | | ||| | ||||| || |||| ||||| || ||||| Sbjct 540442 GTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCGCCGG 540501 Query 154102 TACGCTT---GCCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGG 154158 |||||| ||||||||||| || | ||| ||| ||||||||| |||| ||||||| Sbjct 540502 GACGCTTGCCGCCGCCCTGATCCACATAACGTGCCACATTGTTGAAGACCCTCAGCATGG 540561 Query 154159 GTAGCAGACCGCTGGCGGTACCGTTTGT 154186 | | || || ||| ||| ||||| || Sbjct 540562 GAACGAGGCCATTGGAGGTGCCGTTCGT 540589 Score = 105 bits (116), Expect = 7e-18 Identities = 161/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || ||||| | || ||||| || ||||||||||| || | |||| Sbjct 635921 CGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCA 635862 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || ||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 635861 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 635802 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | ||| | || || | || || ||||||| || | Sbjct 635801 TC-CTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGAT 635743 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTATGTT 139774 |||||||| || | || || ||||| || ||||| ||| |||| Sbjct 635742 GGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT--CTTGTGTT 635699 >seq4121 Length=254077 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || ||||||| || ||||| || || |||||||||||| Sbjct 189266 GCCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGA 189325 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||| || ||||| || ||||| |||||||||| |||||||| ||||| Sbjct 189326 CAAGGTGCGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 189385 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | || |||| |||||| || Sbjct 189386 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAGGGCTCAAC 189445 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| ||| | ||||| ||||||| || || ||||| || |||||| Sbjct 189446 CTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCATA 189494 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || ||||||| || ||||| || || |||||||||||| Sbjct 190178 GCCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGA 190237 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||| || ||||| || ||||| |||||||||| |||||||| ||||| Sbjct 190238 CAAGGTGCGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 190297 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | || |||| ||| || || Sbjct 190298 GATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGGTTCGAC 190357 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||| ||||| || || || || |||||||| Sbjct 190358 CTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATTTGCAT 190405 Score = 111 bits (122), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||| | || ||||| | || ||||| ||||| |||||||||||| Sbjct 189722 GCCTCCTCGAAGACGGAGCACCAAGTGGAGGGTTGACTCCTTTTGGATGTTATAATCGGA 189781 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | |||| || | ||||| ||||| || || || |||||| ||| |||||||| || | Sbjct 189782 TAGAGTGCGTCCA-TCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 189840 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || || || ||||| ||| || || | | || | || |||| ||| || | Sbjct 189841 GGATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGGAGGGTTCGA 189900 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||| ||| | ||||| ||||||| || || ||||| || |||||| Sbjct 189901 CCTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCATA 189950 >seq5136 Length=173398 Score = 111 bits (122), Expect = 2e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || ||||| || || |||||||||||| | Sbjct 115663 CCACCACGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAATCGGAC 115722 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| |||||||| || || |||||| || ||||| || || || Sbjct 115723 AGAGTACGTCCA-TCTTCAAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGG 115781 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| || || ||| | || | || | | ||| | ||||| | ||||| | Sbjct 115782 AATTCCTTCCTTATC-CTGAATCTTAGCCTTGACGTTTTCGATGGTGTCTGAAGGCTCAA 115840 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| || | |||||||| ||||| || || ||||| |||||||| Sbjct 115841 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 115889 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||| | || |||||||| || |||||||||||| | Sbjct 116119 CCTCCACGAAGACGGAGAACCAAGTGCAAAGTGGACTCTTTCTGGATGTTATAATCGGAC 116178 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| || | ||||| || ||| |||||| || |||||||| || || Sbjct 116179 AGGGTGCGTCCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGG 116238 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || |||||| || | | || | || |||| ||| || ||| Sbjct 116239 ATTCCTTCCTTATCCTGGATTTTAGCCTTCACATTCTCGATGGTATCGGAGGGTTCGACC 116298 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || | || || || || || ||||| Sbjct 116299 TCCAAGGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 116345 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| || |||| || || || || || ||||| || ||| Sbjct 116802 GCCTCCGCGGAGACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 116861 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || |||| || | ||||||||||| || || || |||||| || ||||| || || | Sbjct 116862 CAGGGTGCGTCCA-TCTTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGG 116920 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || || || || || ||| || || | | || | || |||| ||||||| Sbjct 116921 GAATACCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCCA 116980 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | |||||||| ||||| || || || || || ||||| Sbjct 116981 CCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 117029 >seq3746 Length=358675 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| || ||| || |||| ||| || Sbjct 174188 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 174247 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || || |||||||||| |||||||| || || ||||| || ||||| | Sbjct 174248 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGG 174307 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||| | ||||||||||| | ||| | |||||| Sbjct 174308 ATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTG 174367 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||||| || || |||||||| Sbjct 174368 CCGGTGAGGGTTTTCACAAAGATTTGCAT 174396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496028450813600