Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5134 331 1e-85 >seq5134 Length=897107 Score = 331 bits (366), Expect = 1e-85 Identities = 1208/1872 (65%), Gaps = 32/1872 (2%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 || |||| |||||| || || | | | || || || || || || || ||||| || Sbjct 539121 TTATCCACTGTGAACTGGATAGCATTTGCAGCCGGCTTTGTGCGCAGGTAATACATCCCT 539180 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||| ||||| |||| || || || || ||| || || ||| |||| Sbjct 539181 GTTTTGAGACCAGCTTTCCAGGAATAAAAGTGTATGGACGTCAGCTTTCCGTAATTCGGC 539240 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 ||||| | ||| ||||| | || ||||| || || ||||| || |||| ||||| ||| Sbjct 539241 TCTGCCACATGAATATTGAACGACTGACTCTGGTCTATGAACGCACCCCGATCTGCGGCC 539300 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 78947 ||||| ||| | | ||| | |||||||| | || || || | |||| | | Sbjct 539301 ATTTTAATGGTGGACTTCACCGAGATTTCCCACACGGTCTTGTACAGATCGCGAAC---C 539357 Query 78948 TTCTGG---AAGGTTTG--TATTCTGAATGGATCCACCATCT-GCCATAATCCTATTCTT 79001 |||||| | || | |||| || ||||| || || || | || ||| ||||| Sbjct 539358 TTCTGGGGAATGGACTCGATATTTTGGATGGAGCC-CCTGCTCGAGATGATCTGGTTCTT 539416 Query 79002 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 79061 || || || | ||| || | ||| |||| | || || | ||| | ||||| || Sbjct 539417 CATGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTCAGCAAATGATGGTTAACCAC 539476 Query 79062 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGA 79121 || || || ||||||| || | || ||||||||||| |||| || || || | || Sbjct 539477 CTGGAACTCGCCAGACAGCACGCGCCTGGTGTAAATATTTGTGGTGTAGGGCTCGAAGGA 539536 Query 79122 TTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACT 79181 ||| || || |||| || |||||||| || ||||| ||||| || || || | | Sbjct 539537 TTCGTTGTTGCCCATTATCTGAGCAGTAGAGGCCGTGGGCATGGGAGCGACAAGCAGGGA 539596 Query 79182 ATTTCTAAGACCGTA-TGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAG 79240 || | | ||||| || | |||| || || || || ||| ||||| |||| | Sbjct 539597 GTTCCGGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTTTGCCAGTCCCACAGATTCG 539655 Query 79241 ACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGT 79300 || | | ||| | || || || ||||| || || || || || || Sbjct 539656 TTGGCTCCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTCGT 539715 Query 79301 ATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAAT 79360 | ||||| || |||||||| | | || | ||| || || || || | || ||||| | Sbjct 539716 AGGTTTCGTAGGGTCCTTCGATCTGCGCCAGTTCGCAGCTGGCTTCCAGGGCGCCGTAGT 539775 Query 79361 AAATGGTTTCGAAAATCTTCTTATT---GAGATCTTGTGCTTCTAGGCTATCAAATGGAT 79417 | ||||| ||||| |||| || || ||| || || || ||| ||| | || Sbjct 539776 AGATGGTCTCGAATATCTGCTGGTTCAAGAGGCCT---GCCTCCTCGCTTTCATAGGGGA 539832 Query 79418 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 79477 | | |||||| | ||||| || ||||| |||||||| || || | ||| | ||| | Sbjct 539833 ATCGCATGAGAATCAGGGCGTCAGCGAATCCCTGAACACCGATGCCCACAGGGCGATGCC 539892 Query 79478 TCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 79537 || || || | | || ||||| | |||||| | || || || || || || |||| Sbjct 539893 TCAAGTTGGACTTCTTTGCCTCTGGCAGGGGATAAAAGTTGATGTCGATGATCTTGTTGA 539952 Query 79538 GATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA--TCGTC-CAT 79594 |||| || | ||| || ||||| || || || ||| | || || | Sbjct 539953 GATTTTTGGTCACCGTCTTGGTAACTTCCTTGAGCTTCTTGAAGTCATACGTCTTCTCGG 540012 Query 79595 CTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 79654 | | |||||||| || | |||| || |||| || || ||||| | ||||| || Sbjct 540013 GTGTGACAAACATATTGAGGGCGATCGAGGCCAAGTTGCAGACGGCAATCTCATCAGGCG 540072 Query 79655 CCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTT 79714 | || | | ||||| ||||| | ||| || ||||| ||||| || | ||| || | Sbjct 540073 AGGAGTACTCGACGATTTCGGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCT 540132 Query 79715 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCT 79774 | || ||||| ||| || |||||||| | || ||| | || | |||||||| | || Sbjct 540133 GGTTGCTCTTCCGGTTGCAGGCATCCTTGAACAGCATGTAGGGGTTCCCAGTTTCCACCT 540192 Query 79775 GAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATAGACTTGTATCTCTTT 79833 ||| || || || || ||| | | ||| ||||||| | | ||| | | Sbjct 540193 GAGCCTCAATGATGGCGAACCAAAGGGACT-GAGCCTTCACCGTTCGGTTGG--CACGAC 540249 Query 79834 TCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATC 79891 ||||| ||||| | || || | ||||||||| || ||||| ||||||| | | Sbjct 540250 CCTCTTGCTCGTACTTCTCGTACAACCTTTCGAACTCATCGCCCCACACATCGTGAAGGC 540309 Query 79892 CAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAA 79951 | || |||| || || ||||| | |||||| || |||| ||| || || ||||||| Sbjct 540310 CGGGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCGACGCGCTTCATAA 540369 Query 79952 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 80011 ||||||| || ||||| || || || ||||| | || | | |||||| || || | Sbjct 540370 AGAGATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGGTTCTCCTCCTTGCCGG 540429 Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071 | ||||| || || || |||||| | | | || || ||||| || |||| ||| |||| Sbjct 540430 TGTTCTTCTTCAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATGG 540489 Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131 | | | || || || ||| || |||||||| | || | || || || | | Sbjct 540490 CAAAGGCGCCGGGACGCTTGCCGCCGCCCTGATCCACATAACGTGCCACATTGTTGAAGA 540549 Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 80191 | |||| ||| |||| | |||||||| || || || || ||| | || || | || Sbjct 540550 CCCTCAGCATGGGAACGAGGCCATTGGAGGTGCCGTTCGTGCCGCAAATCGAGGTGCCCT 540609 Query 80192 TGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 80249 | || || || | | ||| ||| || || || || ||| || ||||| | || Sbjct 540610 TCGCCCGGATGCAGTGGACATT--TAGCCCGATGCCGCCAGCCGACTTCGAGATCATGGC 540667 Query 80250 GCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAA 80309 ||| | | | | | | |||||||| ||| || | ||||| | || || || Sbjct 540668 GCACTGCTCCACGGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTGAGGAGGAA 540727 Query 80310 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 80369 ||| |||| || | ||| | || | || ||| | || || || || || || Sbjct 540728 ACACGAGGACAGCTGCGGCCGATTCGTGGCAGCGGCAAAAAGTGTGGGCGACGCATGGGT 540787 Query 80370 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATG 80429 || | || |||| ||||| ||||| || | |||| || |||||| || Sbjct 540788 GAAGTAACGCTCCGACAAGAGATTATACGTTTCCACGGCTGCATCGATATCCTCCCCGTG 540847 Query 80430 AATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTAT 80489 ||||| | ||| || ||||| | ||||||||| || | || |||||||| ||| | Sbjct 540848 TATTCCGATCGCCACGCGCATCAGCATGTGCTGCGGGCGCTCGGCGATCTTGCCGTTTCT 540907 Query 80490 TTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 80549 |||| ||| || || ||| | || || || ||||| |||||||| |||||| || Sbjct 540908 CTTCAGCAAATAGGAACGTTCGAGGGTCTTGAACCCAAAGTAGTTGTACCCAAAGTCGCG 540967 Query 80550 TTCGTAAATAAT 80561 |||||||| || Sbjct 540968 ATCGTAAATTAT 540979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718217327062120