Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq5136 105 5e-18 seq3746 89.7 4e-13 seq4121 87.8 1e-12 >seq5136 Length=173398 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | ||||| || | |||| ||| || || | || ||||||||| Sbjct 116119 CCTCCACGAAGACGGAGAACCAAGTGCAAAGTGGACTCTTTCTGGATGTTATAATCGGAC 116178 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| ||||||||||| |||||||| ||||||||||| ||||| | || Sbjct 116179 AGGGTGCGTCCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGG 116238 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| | || || | | | || ||| | ||||| Sbjct 116239 ATTCCTTCCTTATCCTGGATTTTAGCCTTCACATTCTCGATGGTATCGGAGGGTTCGACC 116298 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || |||||||| || || || |||||||| || |||||| Sbjct 116299 TCCAAGGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAGATCTGCATT 116346 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | |||||| || | |||| |||||| || | ||||| |||||| Sbjct 114979 CCTCCGCGAAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 115038 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| |||| ||| || ||||| || || | ||||| ||||| | || Sbjct 115039 AGAGTACGTCCGTCCTCCAGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 115098 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | | | |||||| | |||||| Sbjct 115099 ATTCCCTCCTTATCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGCTCGACT 115158 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||||||||| | ||| ||||| || |||||||| Sbjct 115159 TCCAGGGTGATGGTTTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 115205 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||||||||| || |||||| || | |||||||||||| Sbjct 115891 CCTCCACGAAGACGGAGGACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGAC 115950 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||| ||||||||| || || || | ||||| ||||| | || Sbjct 115951 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCAGCGAAGATGAGACGCTGCTGATCTGGAGGG 116010 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | | | |||||| | |||||| Sbjct 116011 ATTCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGCTCGACT 116070 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || |||||||| | ||| ||||| || || |||||| Sbjct 116071 TCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATT 116118 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || ||||| | | || ||||| | ||| |||||| || | ||||| || || Sbjct 116575 CCACCGCGCAGACGGAGGACTAAATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAA 116634 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||| |||||||||||| || ||||||||||| ||||| | || Sbjct 116635 AGAGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGA 116694 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | ||||| | ||| ||||| || ||| || Sbjct 116695 ATTCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGTGTCTGAAGGCTCAACC 116754 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || || || |||||||| || ||||| Sbjct 116755 TCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 116801 >seq3746 Length=358675 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || ||||| | | |||||| || | || |||||| || | ||||| |||||| Sbjct 174170 CCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 174229 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||| || |||||||| || |||| ||||| ||||| | || Sbjct 174230 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGG 174289 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | ||||| | | | ||||| || ||| || Sbjct 174290 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACC 174349 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| || ||||||||||| |||||||| Sbjct 174350 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 174396 >seq4121 Length=254077 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | ||||| || | ||| |||||| || | || |||||||| Sbjct 190178 GCCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGA 190237 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || ||| |||| |||| || || || || || |||| ||||| ||||| | || Sbjct 190238 CAAGGTGCGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 190297 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | ||||| | | | || ||| | ||||| Sbjct 190298 GATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGGTTCGAC 190357 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || | ||| |||||||||||||||||||| Sbjct 190358 CTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATTTGCATTTT 190408 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | ||||| || | ||| |||||| || | || |||||||| Sbjct 189266 GCCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGA 189325 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || ||| |||| |||| || || || || || |||| ||||| ||||| | || Sbjct 189326 CAAGGTGCGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 189385 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | || || | ||| || ||| | ||| || Sbjct 189386 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAGGGCTCAAC 189445 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| ||||| ||||| || || ||||| Sbjct 189446 CTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381342953348514