Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5134 259 6e-64 >seq5134 Length=897107 Score = 259 bits (286), Expect = 6e-64 Identities = 1169/1841 (63%), Gaps = 33/1841 (2%) Strand=Plus/Plus Query 70823 CGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAAT 70882 ||||||| || || || || ||||| |||||||| ||||| |||| ||||| | Sbjct 539153 CGGCTTT-GTGCGCAGGTAATACATCCCTGTTTTGAGACCAGCTTTCCAGGAATAAAAGT 539211 Query 70883 GCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTT 70942 | || ||| || || || | || || || | |||||||| | ||||||||| | Sbjct 539212 GTATGGACGTCAGCTTTCCGTAATTCGGCTCTGCCACATGAATATTGAACGACTGACTCT 539271 Query 70943 GATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCC 71002 | || ||||| || |||| ||||| |||||||| ||| | | ||| | ||||||| Sbjct 539272 GGTCTATGAACGCACCCCGATCTGCGGCCATTTTAATGGTGGACTTCACCGAGATTTCCC 539331 Query 71003 AAATAGTTTTATAAAC-TCGCTTAATATCTTCTGG---AAGGTTTG--TATTCTGAATGG 71056 | | || || || | |||| | ||||||| | || | |||| || |||| Sbjct 539332 ACACGGTCTTGTACAGATCGCGAAC---CTTCTGGGGAATGGACTCGATATTTTGGATGG 539388 Query 71057 ATCCACCATCTGCA-ATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTT 71115 | || || || | || ||| || || || || || | ||| || | ||| ||| Sbjct 539389 AGCC-CCTGCTCGAGATGATCTGGTTCTTCATGTCGTCGTCCCACAAGTCCAGCTCCGTT 539447 Query 71116 AAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTG 71175 | | || || | |||| | ||||| || || || || ||||||| || | | ||| Sbjct 539448 AGGTCCCTCAGCAAATGATGGTTAACCACCTGGAACTCGCCAGACAGCACGCGCCTGGTG 539507 Query 71176 TAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 71235 |||||||| |||| || || || | || || || || |||| || |||||||| || Sbjct 539508 TAAATATTTGTGGTGTAGGGCTCGAAGGATTCGTTGTTGCCCATTATCTGAGCAGTAGAG 539567 Query 71236 GCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATG-TGATCGGATTTTATC 71294 || || ||||| || || || | || || | | ||| || || | | || || Sbjct 539568 GCCGTGGGCATGGGAGCGACAAGCAGGGAGTTCCGGACACCGTGCTGCTTG-ATGGACTC 539626 Query 71295 TTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNN 71354 || || || ||| | ||| |||| || ||| | Sbjct 539627 CTTCAGTTTTTGCCAGTCCCACAGATTCGTTGGCTCCTTGTCCCACATGTCGTACTGCAG 539686 Query 71355 NATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAG 71414 || || || || || || | || || ||||| |||||||| | | || || Sbjct 539687 AATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCGTAGGGTCCTTCGATCTGCGCCAG 539746 Query 71415 TTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATT---GAG 71471 ||| || || || || | || || || || ||||| ||||| |||| || || ||| Sbjct 539747 TTCGCAGCTGGCTTCCAGGGCGCCGTAGTAGATGGTCTCGAATATCTGCTGGTTCAAGAG 539806 Query 71472 ATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCC 71531 || || ||| ||| ||| | || | | |||||| | ||||| || ||||| Sbjct 539807 GCCT---GCCTCCTCGCTTTCATAGGGGAATCGCATGAGAATCAGGGCGTCAGCGAATCC 539863 Query 71532 TTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGG 71591 ||||| || || || | ||| | || ||| || || | | || ||||| | || Sbjct 539864 CTGAACACCGATGCCCACAGGGCGATGCCTCAAGTTGGACTTCTTTGCCTCTGGCAGGGG 539923 Query 71592 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTT 71651 |||| | || || || || || || ||||||||| || | ||| || ||||| Sbjct 539924 ATAAAAGTTGATGTCGATGATCTTGTTGAGATTTTTGGTCACCGTCTTGGTAACTTCCTT 539983 Query 71652 TAGTTTGAGAAAATCAAATCTCCCATC---TATTACAAACACGTTCAAGGCAACAGATGC 71708 || || || ||| | || || | | ||||||| || | ||| | || || Sbjct 539984 GAGCTTCTTGAAGTCATACGTCTTCTCGGGTGTGACAAACATATTGAGGGCGATCGAGGC 540043 Query 71709 CAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATT 71768 || || || ||||| | ||||| || || || | | ||||| ||||| | || Sbjct 540044 CAAGTTGCAGACGGCAATCTCATCAGGCGAGGAGTACTCGACGATTTCGGTGCACAAGTT 540103 Query 71769 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 71828 || ||||||||||| || | ||| || || || ||||| ||| || |||||||| | Sbjct 540104 GCTGCACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCGGTTGCAGGCATCCTTGAA 540163 Query 71829 AAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG-ACTC 71887 || || | || | |||||||| | ||||| || || || || ||| | | ||| Sbjct 540164 CAGCATGTAGGGGTTCCCAGTTTCCACCTGAGCCTCAATGATGGCGAACCAAAGGGACT- 540222 Query 71888 GAGCCTTTATTATATTCTTGTATCTCTTTTCTCTT--TCGTATTGTGTATATAATCGTTC 71945 ||||||| | | ||| | | ||||| ||||| | || || | ||| Sbjct 540223 GAGCCTTCACCGTTCGGTTGG--CACGACCCTCTTGCTCGTACTTCTCGTACAACCTTTC 540280 Query 71946 GAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCA 72005 |||||| || ||||| ||| || | || || |||| | || ||||| | ||||| Sbjct 540281 GAACTCATCGCCCCACACATCGTGAAGGCCGGGGCATTTGTGGGGGCACATGAGCGACCA 540340 Query 72006 CTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 72065 || |||| | | || || |||||||||||||| || ||||| || || || || Sbjct 540341 ATCGCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGTAGAACAG 540400 Query 72066 ATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 72125 ||| | || | | |||||| || || || ||||| || || || |||||| | | | Sbjct 540401 ATCGCGGGCGCGGTTCTCCTCCTTGCCGGTGTTCTTCTTCAGTTCCAGGAACTCAAAGAC 540460 Query 72126 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTG 72185 || || ||||| || |||| ||| ||||| | | || || || ||| || ||||| Sbjct 540461 GTCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCGCCGGGACGCTTGCCGCCGCCCTG 540520 Query 72186 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGC 72245 ||| | || | || || || | || |||| ||| |||| | |||||||| | Sbjct 540521 ATCCACATAACGTGCCACATTGTTGAAGACCCTCAGCATGGGAACGAGGCCATTGGAGGT 540580 Query 72246 ACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCT 72303 || || || ||| | || || | || | || || || | || ||| ||| || Sbjct 540581 GCCGTTCGTGCCGCAAATCGAGGTGCCCTTCGCCCGGATGCAGTGGACATT--TAGCCCG 540638 Query 72304 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 72363 || || || ||| || ||||| | ||||| | | | | | | |||||||| Sbjct 540639 ATGCCGCCAGCCGACTTCGAGATCATGGCGCACTGCTCCACGGACTTGAAAATGCCCTCG 540698 Query 72364 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 72423 || || || ||||| | || || ||||| |||| || | ||| | || | Sbjct 540699 ATGGAGTCGGCCGTCATGGTGAGGAGGAAACACGAGGACAGCTGCGGCCGATTCGTGGCA 540758 Query 72424 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 72483 || ||| | || || || || || || || | || |||| ||||| ||||| Sbjct 540759 GCGGCAAAAAGTGTGGGCGACGCATGGGTGAAGTAACGCTCCGACAAGAGATTATACGTT 540818 Query 72484 TCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGC 72543 || | |||| || |||||| |||||||| | ||| || ||||| | ||| ||| Sbjct 540819 TCCACGGCTGCATCGATATCCTCCCCGTGTATTCCGATCGCCACGCGCATCAGCATGTGC 540878 Query 72544 TGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 72603 || || | || |||||||| ||| | |||| ||| ||||| ||| | || || Sbjct 540879 TGCGGGCGCTCGGCGATCTTGCCGTTTCTCTTCAGCAAATAGGAACGTTCGAGGGTCTTG 540938 Query 72604 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 || ||||| |||||||| |||||| || |||||||| || Sbjct 540939 AACCCAAAGTAGTTGTACCCAAAGTCGCGATCGTAAATTAT 540979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671091104487080