Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5136 98.7 7e-16 seq4121 89.7 4e-13 >seq5136 Length=173398 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||||||||| ||||| || || || |||||||| || ||| | | |||| || Sbjct 116593 ACTAAATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGTCCGTCCTCC 116652 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||||||| ||| | ||||| || || || || |||||||| || ||||| Sbjct 116653 AGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 116712 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || |||| ||||| || | || || || | ||| |||||||| Sbjct 116713 ATTTTAGCCTTGACGTTTTCAATGGTGTCTGAAGGCTCAACCTCCAGGGTGATGGTTTTG 116772 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| || ||||| Sbjct 116773 CCAGTGAGGGTCTTCACAAAGATCTGCAT 116801 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| ||||| || || || || ||||||||||| ||| | | | | ||||| Sbjct 116365 ACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCATCTTCA 116424 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || |||||||| | |||||||| || || || |||||||| || ||||| Sbjct 116425 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGG 116484 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| |||||| | || || || ||| || || || | ||| ||||| || Sbjct 116485 ATTTTGGCTTTTACATTCTCAATTGTGTCGGATGGCTCGACTTCCAGGGTGATGGTCTTG 116544 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || ||||| || |||||| Sbjct 116545 CCAGTCAGCGTCTTCACAAAGATCTGCATA 116574 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| ||||| || || || || |||||||||||| || | | |||| || Sbjct 115909 ACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCC 115968 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||||||||||| | || | ||| || || || || ||||| || ||||| Sbjct 115969 AGTTGTTTGCCAGCGAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCTTGG 116028 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||||||| | || ||||| ||| || || || | ||| ||||| || Sbjct 116029 ATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGCTCGACTTCCAGGGTGATGGTCTTT 116088 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||| || || || || ||||| Sbjct 116089 CCGGTCAAAGTCTTCACGAAGATCTGCAT 116117 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||||||||| || || || |||||||| ||| || | | | ||||| Sbjct 116820 AACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTC 116879 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || || ||| | ||||| || || ||||| ||||| || || || || Sbjct 116880 GAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTATCCTG 116939 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| | || || |||||| | || || || ||||| ||||| || Sbjct 116940 GATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTT 116999 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 || |||| || || ||||| || ||||| || || Sbjct 117000 GCCAGTCAAGGTCTTCACAAAGATCTGCATGTTGGA 117035 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || || || || ||||| |||||| ||| | | | ||||| Sbjct 115680 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAATCGGACAGAGTACGTCCATCTTC 115739 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| || ||| | ||||| || || ||||| ||||||||||| || || Sbjct 115740 AAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCCTG 115799 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || ||| || |||| ||||| || | || || || | || ||||| || Sbjct 115800 AATCTTAGCCTTGACGTTTTCGATGGTGTCTGAAGGCTCAACCTCAAGAGTGATGGTCTT 115859 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || || || || |||||||| Sbjct 115860 GCCAGTCAAGGTCTTGACGAAGATTTGCAT 115889 >seq4121 Length=254077 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || ||||| |||||| | | | |||| || Sbjct 190197 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTGCGTCCGTCCTCC 190256 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || |||||| | |||| ||| || || || || ||||| || ||||| Sbjct 190257 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 190316 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || ||||||||| ||| || || || || ||||| || Sbjct 190317 ATCTTAGCCTTGACATTCTCGATGGTATCGGAGGGTTCGACCTCCAAAGTGATGGTCTTG 190376 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || |||| ||| || |||||||||||||| || Sbjct 190377 CCAGTCAAAGTCTTCACAAAAATTTGCATTTT 190408 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || ||||| |||||| | | | |||| || Sbjct 189285 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTGCGTCCGTCCTCC 189344 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || |||||| | |||| ||| || || || || ||||| || ||||| Sbjct 189345 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 189404 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || ||||||||| || || || | ||||||||| || Sbjct 189405 ATCTTGGCCTTCACATTCTCAATGGTATCGGAGGGCTCAACCTCAAGGGTAATGGTCTTT 189464 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| || || || || |||||| Sbjct 189465 CCGGTCAGAGTCTTCACGAAGATCTGCATA 189494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362153894199753