Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq4881 107 2e-18 seq2542 89.7 4e-13 seq3746 86.0 5e-12 >seq4881 Length=334723 Score = 107 bits (118), Expect = 2e-18 Identities = 226/332 (68%), Gaps = 5/332 (2%) Strand=Plus/Plus Query 20948 CGATAATGCCGCAGCCCAGCCGGCCGCCCGAGTTGCCCGTAACCTTGCTAAGCGGGTGGT 21007 |||| | ||||||||| | ||| |||| | ||||||||| |||||| ||| |||| Sbjct 296748 CGATGACGCCGCAGCCAATTCGGGCGCCAGCGTTGCCCGTGGACTTGCTCAGCTCGTGGC 296807 Query 21008 CTGTTAAGCCGAGGTCATCGCGATCCGTGTGCACTACCAAGCTACGACCCAATATGCTGA 21067 | |||||| |||||| ||| | ||| || |||| | | || || | |||||| Sbjct 296808 CACCCTTGCCGAGATCATCGGCATCGGCGTGGACCACCACGGTGCGGCCGATGATGCTGT 296867 Query 21068 GCGGACCAAACAAGC-TCATCACGTTGTCGCTCATGTCGACAGGCGTCAGCGCGGTGCAG 21126 | || || |||| | ||| | |||| | ||| ||| || | || || | Sbjct 296868 CGGCGCCGAA-AAGCGTGATCTTGGAGTCGGTGATGCTGACCTTGGTGGG-GCAGTC--G 296923 Query 21127 CCCGCGGAGCGGACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCG 21186 || | || | |||||| || ||||| | ||| || | || || |||||||||| Sbjct 296924 CCGGTGGCCTCAATGTTGCCAAGGTCGCCCAGGTGACGGTTCTCGTCGGTGGGAGCGCCG 296983 Query 21187 TGATTTTGGTGCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCG 21246 || | | | | | || || ||||| |||| ||| ||||||||||| || |||| Sbjct 296984 TGCTCCTTGCCCTTGGGATTGAAGTGGGGTCCGGACGACATGCAGCCGTTGGTGTTGTCC 297043 Query 21247 CCGAACTCGTGAACGTGAAAGCCGTGCAGTCC 21278 ||||||||||| ||||| ||||||||||| || Sbjct 297044 CCGAACTCGTGCACGTGGAAGCCGTGCAGGCC 297075 >seq2542 Length=175699 Score = 89.7 bits (98), Expect = 4e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 34581 GGCGGCGTGGGACTGAACTTAACCGGCGGCAATCACATAATTATGTTGGAGCCCCACTGG 34640 ||||| |||||||| || | | | | ||| || || || ||| |||| | ||| ||| Sbjct 148828 GGCGGAGTGGGACTTAATCTCAATGTGGCCAACCATATGATAATGGTGGACCTCCATTGG 148769 Query 34641 AACCCGCAGATCGAACTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAAAAGAAGCGC 34700 ||||||||| |||||| ||||| || ||||||||| |||| || |||||||||| Sbjct 148768 AACCCGCAGCTCGAACGACAGGCTCAGGACCGCATCTACCGATATGGTCAAAAGAAGCCA 148709 Query 34701 ACCTTCGTCTAC 34712 ||||||| ||| Sbjct 148708 TCCTTCGTTTAC 148697 >seq3746 Length=358675 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || |||||||| || || ||||| || | || || ||||||| Sbjct 174187 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTC 174246 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||||||| ||| | |||||| ||||| Sbjct 174247 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTG 174306 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | ||| || || ||||||| || | ||| ||||| || Sbjct 174307 GATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTT 174366 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||||| ||||| |||||||| Sbjct 174367 GCCGGTGAGGGTTTTCACAAAGATTTGCAT 174396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414543833409802