Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq1117 82.4 8e-11 >seq1117 Length=3547 Score = 82.4 bits (90), Expect = 8e-11 Identities = 171/253 (68%), Gaps = 9/253 (4%) Strand=Plus/Minus Query 6476 CGGAGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCT 6535 || || ||||| ||||| || || || | || || || || | |||||||| || Sbjct 2962 CGCAGGGCTTCCCCAAACGCCACGGCCTTGCCCGCAATCACGTGCATCAGCGGGCCACCC 2903 Query 6536 TGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTA---GTA 6592 || | || ||||| | ||||| || | |||||||| | || |||||| || Sbjct 2902 TGCAAGCCAGGGAACACGGCAGAGTTGATCTTCTTGGCCAGC---GCCTCGTTATTGGTC 2846 Query 6593 AGAATGAGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCG 6652 || || ||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 2845 AGGATCAGGCCGCCACGCGGGCCACGCAAAGTTTTGTGCGTGGTGGATGTCACGACATCC 2786 Query 6653 GCACCCCATTTGAGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCC 6712 ||| | | | || || | | |||| ||||| || | ||||| ||||| ||| Sbjct 2785 GCA---TACTCAATCGGGTTGGGATACAGACCGGCAGCGACCAGACCAGCGAAATGCGCC 2729 Query 6713 ATATCGACCATCA 6725 || || ||||||| Sbjct 2728 ATGTCCACCATCA 2716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555323401284680