Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5134 167 5e-36 seq5136 136 9e-27 >seq5134 Length=897107 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || |||||||| ||||||||||| || || | || ||||| || || Sbjct 635909 TGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 635850 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | ||| ||||| ||||| ||||||||||| ||||||||||| Sbjct 635849 TTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 635790 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | ||||| |||||| ||||| || || || ||||| || || Sbjct 635789 GCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTG 635730 Query 104537 AGTGTTTTTACAAATATCTGCATTTTGTGT 104566 || || || || || |||||||| |||||| Sbjct 635729 AGGGTCTTAACGAAGATCTGCATCTTGTGT 635700 >seq5136 Length=173398 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || | ||| | |||||||| |||||||| || || ||| Sbjct 116344 ATTCCACCACGGAGACGGAGGACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCA 116403 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || |||||||| || | | ||| ||||| ||| Sbjct 116404 GAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGA 116463 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || || || || || ||||||||||| || | || ||| || || Sbjct 116464 GGAATTCCCTCCTTGTCTTGGATTTTGGCTTTTACATTCTCAATTGTGTCGGATGGCTCG 116523 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| ||||| || || || ||||| |||||||| Sbjct 116524 ACTTCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 116573 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || ||||| || || ||||| | || ||||| || |||||||| Sbjct 115693 GTCGACTCCTTCTGGATGTTATAATCGGACAGAGTACGTCCATCTTCAAGCTGTTTTCCG 115752 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || || || || |||||||| |||||||||||||| || || Sbjct 115753 GCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCCTGAATCTTAGCCTTG 115812 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | ||| || ||| || ||||| || || || ||||| ||||| | || Sbjct 115813 ACGTTTTCGATGGTGTCTGAAGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTC 115872 Query 104543 TTTACAAATATCTGCATT 104560 || || || || |||||| Sbjct 115873 TTGACGAAGATTTGCATT 115890 Score = 105 bits (116), Expect = 2e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || ||||| || || ||||| || || || | || ||||| || || Sbjct 115231 TGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGTCCATCTTCAAGCTGC 115290 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||| || || || | | ||| ||||| || || || || || || || || || || Sbjct 115291 TTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGGATTTTA 115350 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | |||||| ||||| ||||| || || || ||||| ||||| Sbjct 115351 GCCTTCACATTCTCGATGGTATCAGAGGGTTCGACCTCCAGGGTGATGGTCTTGCCAGTC 115410 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | || || || ||||||||||| Sbjct 115411 AAAGTCTTCACGAATATCTGCAT 115433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151313825109964