Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq3719 159 3e-34 >seq3719 Length=165196 Score = 159 bits (176), Expect = 3e-34 Identities = 212/290 (73%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| || |||||| |||| | ||| || || ||||| ||||| Sbjct 79930 ACGCCGGTGGAACCAAATCCGTTCTCGCCGCGTTCGGTGTCCTCCAGTTTGTCCACCAAC 79871 Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 |||| || || | | || ||||||||| || | ||| || || |||||||| ||| Sbjct 79870 TCCAGCTCCGGATA-GAAGATGCGCTCGCAAATGAACTGGGCGATGCGGTCGCCGCGCTT 79812 Query 5620 TACCTCGAAATCGTTGTGGCCGAAG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 |||||||| || || |||| || ||||| || ||||||| |||||||||||| Sbjct 79811 CACCTCGAACTCCACGT--CCGAGTGATTAAACAGGACAACGCCCAGGTTGCCGCGGTAA 79754 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || |||| | |||||| || ||||| |||||||||| ||| || ||||| ||||| || Sbjct 79753 TCCTCGTCCACCACGCCGGCACCCACATCGATGAAGTTCTTCACGGCCAGTCCGGACCGC 79694 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 || |||||||| |||||| | || ||||||| ||| | ||| || || || Sbjct 79693 GGGGCCACGCGTCCGTAGGAGCCCTCGGGAACCTGCACCTGGAGATCGGT 79644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430024351695896