Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq5136 118 9e-22 seq3746 116 3e-21 seq4121 102 7e-17 >seq5136 Length=173398 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||||||||||||||| |||||| ||||||||||| |||| Sbjct 116574 ACCACCGCGCAGACGGAGGACTAAATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGA 116633 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || |||||||||| || || ||| || | || || ||||||||||| | Sbjct 116634 AAGAGTG-CGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGG 116692 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| ||||| ||||| | ||||| || | || ||| Sbjct 116693 GAATTCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGTGTCTGAAGGCTCAA 116752 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || |||||||| || ||||| || |||||||| |||||||| Sbjct 116753 CCTCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 116801 >seq3746 Length=358675 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| || || || || |||||| || |||||||| || | Sbjct 174169 ACCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 174228 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || |||||||||||||||| ||| || | || | ||||||||||||| || Sbjct 174229 CAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGG 174288 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| || || ||||| | | | ||||| || | || |||| Sbjct 174289 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCAC 174348 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| || |||||||| ||||||||||| || ||||| ||| Sbjct 174349 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATGGTG 174400 >seq4121 Length=254077 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || ||||| ||||| | ||| || |||||||| Sbjct 189285 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTGCGTCCGTCCTCC 189344 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || || | || | |||||||||||| || | | ||||||||| Sbjct 189345 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 189404 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | | |||||||||| | ||| ||| | || ||||| || Sbjct 189405 ATCTTGGCCTTCACATTCTCAATGGTATCGGAGGGCTCAACCTCAAGGGTAATGGTCTTT 189464 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| ||||| || |||||||| Sbjct 189465 CCGGTCAGAGTCTTCACGAAGATCTGCAT 189493 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || ||||| ||||| | ||| || |||||||| Sbjct 190197 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTGCGTCCGTCCTCC 190256 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || || | || | |||||||||||| || | | ||||||||| Sbjct 190257 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 190316 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | | |||||||||| | || ||| | || ||||| || Sbjct 190317 ATCTTAGCCTTGACATTCTCGATGGTATCGGAGGGTTCGACCTCCAAAGTGATGGTCTTG 190376 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | ||| ||||||||||| ||||| Sbjct 190377 CCAGTCAAAGTCTTCACAAAAATTTGCAT 190405 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || || || || ||||||||| ||||| ||||| | | | || || | || | Sbjct 189740 CACCAAGTGGAGGGTTGACTCCTTTTGGATGTTATAATCGGATAGAGTG-CGTCCATCTT 189798 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || |||||||||||||| || | || ||||||||| Sbjct 189799 CCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATACCCTCCTTGTCCT 189858 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | |||||||||| | || ||| | || ||||| | Sbjct 189859 GGATCTTGGCCTTCACGTTCTCAATGGTATCGGAGGGTTCGACCTCAAGGGTAATGGTCT 189918 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| ||||| ||||| || |||||||| Sbjct 189919 TTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189949 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| ||||| | || |||||| || |||||||| || | Sbjct 189494 ACCACCACGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGA 189553 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || | |||||||||||||| ||| || |||| | |||||||||||| | Sbjct 189554 TAGAGTG-CGTCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGG 189612 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| || || ||| | | |||||||| | || ||| Sbjct 189613 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCGATGGTATCAGAAGGCTCAA 189672 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || ||||| | ||| ||||| || |||||||| Sbjct 189673 CCTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 189721 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| ||||| | || |||||| || |||||||| |||| Sbjct 189950 ACCACCACGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGA 190009 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || |||||||||||||||| ||| || | || |||||||||||||| | Sbjct 190010 AAGAGTG-CGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAG 190068 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| || || ||| | | | | |||||||| | | || Sbjct 190069 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCAGAGGGTTCAA 190128 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || || || || || || |||||||| Sbjct 190129 CCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 190177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421221766783733