Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq5080 127 1e-24 seq5075 123 1e-23 seq5349 120 2e-22 seq5097 114 7e-21 >seq5080 Length=181368 Score = 127 bits (140), Expect = 1e-24 Identities = 81/89 (91%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| ||||| |||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 15452 AATTAAAAAAAAAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 15511 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 15512 GACGCTCTAACCAACTGAGCTAATGGGCC 15540 Score = 120 bits (132), Expect = 2e-22 Identities = 82/93 (88%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| | | |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 15699 AAGAAAAAAACGATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 15758 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 |||||||| |||||||||||||||||||| ||| Sbjct 15759 GACGCTCTAACCAACTGAGCTAATGGGCCTTCG 15791 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 15244 AAAAAATGATCATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 15303 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 15304 GCTCTAACCAACTGAGCTAATGGGCC 15329 >seq5075 Length=797019 Score = 123 bits (136), Expect = 1e-23 Identities = 88/102 (86%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| | |||| || ||||| | || ||||||||||| |||||||||| ||||||||| Sbjct 495521 AAAGAAAGAAAGAAAAAAAAGTGAAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 495462 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||| |||| |||||||||||||||| Sbjct 495461 CGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 495420 Score = 114 bits (126), Expect = 7e-21 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11441 AATAAAAAAT--CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || ||||||| || | |||||||||| |||||||||| ||||||||||||||||||| Sbjct 488192 AAAAAAAAATACCAGACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 488251 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| ||||||||||||||| Sbjct 488252 ACGACGCTCTAACCAGCTGAGCTAATGGGCC 488282 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 489392 AAAAATTCATTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 489333 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| ||||||||||||||| Sbjct 489332 GCTCTAACCAGCTGAGCTAATGGGCC 489307 >seq5349 Length=800266 Score = 120 bits (132), Expect = 2e-22 Identities = 83/95 (87%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||| ||||||| |||||||||| |||||||||| ||||||||||||||||| Sbjct 202308 AAATAAAAAAAAATTGTTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 202249 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||| |||||||||||||||||||||| Sbjct 202248 GCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 202214 >seq5097 Length=1247432 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 658710 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 658769 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 658770 CTGAGCTAATGGGCC 658784 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 662284 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 662343 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 662344 TGAGCTAATGGGCC 662357 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 662454 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 662513 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 662514 CTGAGCTAATGGGCC 662528 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261472929364708