Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5564 174 2e-39 seq3275 165 1e-36 seq5092 98.7 2e-16 seq3276 96.9 5e-16 >seq5564 Length=908436 Score = 174 bits (192), Expect = 2e-39 Identities = 183/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| | || || ||||||||||| || ||||| ||||||||||| Sbjct 899365 CGCTAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAGGGTATCACGAAGCCAGCTAT 899306 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||||||||| || || ||||| | |||||| | | || || || | Sbjct 899305 CCGCCGTTTGGCTCGTCGTGGCGGCGTAAAGCGCATATCTGGACTCATTTACGAGGAAAC 899246 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | ||| | ||| |||||||| |||||| || ||| ||||| Sbjct 899245 ACGTGGCGTTCTGAAGGTGTTCTTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGA 899186 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||||||||| |||||||| | | || || |||| | ||||| Sbjct 899185 ACACGCCAAGAGGAAGACTGTCACAGCCATGGATGTTTTGTAAGCCCTGAAGAGGCAAGG 899126 Query 16672 C 16672 | Sbjct 899125 C 899125 >seq3275 Length=1211 Score = 165 bits (182), Expect = 1e-36 Identities = 184/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||| |||||||||||||| ||| ||||||||||||| Sbjct 1200 CTGCGTGATAACATCCAGGGTATCACGAAGCCAGCTATCCGCCGTTTGGCTCGTCGTGGC 1141 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| | |||||| | | || || || | |||| |||| ||||| | ||| Sbjct 1140 GGTGTGAAGCGCATTTCTGGACTCATTTACGAGGAAACACGTGGTGTTCTGAAGGTGTTC 1081 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| ||||| || ||| ||||| ||||| || | ||||||||| Sbjct 1080 CTGGAGAACGTAATCCGCGATGCCGTCACCTACACCGAACACGCCAAGAGGAAGACTGTC 1021 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| | || || || |||| | |||||||| | | || ||||| || Sbjct 1020 ACAGCCATGGATGTTGTGTACGCCCTGAAGAGACAAGGCCGCACCCTGTACGGTTTCGGC 961 Query 16694 AGTTAA 16699 ||||| Sbjct 960 GGTTAA 955 >seq5092 Length=621376 Score = 98.7 bits (108), Expect = 2e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| ||||| ||||||||||| || ||||||||||| ||||| Sbjct 470814 CGCCAAGCGTCATCGCAAGGTGCTTCGTGATAACATCCAGGGTATCACCAAGCCCGCTAT 470873 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| ||||| ||||| || |||||| | ||||| || | || || || | Sbjct 470874 TCGCCGCTTGGCCCGTCGCGGTGGTGTGAAGCGTATTTCTGGCCTGATTTACGAGGAAAC 470933 Query 16552 TCGTGATGT 16560 ||| | ||| Sbjct 470934 TCGCGGTGT 470942 Score = 86.0 bits (94), Expect = 1e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 16566 AGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTA 16625 || ||||||| ||| ||| |||| ||| ||| || ||| ||||||||||| || || | Sbjct 471009 AGGTCTTCCTTGAGAACGTGATCCGTGACGCTGTCACCTACACCGAGCACGCCAAGCGCA 471068 Query 16626 AGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATG 16685 | || || ||| ||||||| | |||||||| |||| || || || || | | || | Sbjct 471069 AAACCGTGACCGCCATGGACGTGGTCTATGCCCTGAAGCGCCAGGGACGCACCCTCTACG 471128 Query 16686 GTTTTGGAAGTTAATCT 16702 ||||||| ||||| || Sbjct 471129 GTTTTGGCGGTTAAGCT 471145 >seq3276 Length=3440 Score = 96.9 bits (106), Expect = 5e-16 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||||| | || || ||||||||||| || ||||| ||||||||||| Sbjct 94 CGCCAAACGTCATCGCAAAGTGCTGCGTGATAACATCCAGGGTATCACGAAGCCAGCTAT 35 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCG 16524 ||| ||| ||||||||||||| || || ||||| Sbjct 34 CCGCCGTTTGGCTCGTCGTGGCGGTGTGAAGCG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069958277969