Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq2138 156 8e-34 seq3589 116 7e-22 seq2501 113 9e-21 seq5529 93.3 8e-15 seq966 91.5 3e-14 seq1398 89.7 1e-13 seq5375 82.4 1e-11 >seq2138 Length=17552 Score = 156 bits (172), Expect = 8e-34 Identities = 254/363 (70%), Gaps = 2/363 (1%) Strand=Plus/Plus Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 |||||||| || | || || || || ||||| |||||||| |||||||| | ||| || Sbjct 14959 TTTGCATTGTCCCGTATAAGATGTTTTGGTATCCGTGTATATGTTTGACATAAATAAAAA 15018 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 |||| || ||||| |||||||| |||||| | | | || | ||| ||||| ||| Sbjct 15019 GAATCAATATTTTTGTGACGACCCATACAGAAATATGATCGAATATTATCTTGTTTCTCA 15078 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGATTACA 7524 ||||| ||||||||||| ||||| | || ||| || || || || | ||| Sbjct 15079 CAAGCCACATCGTCAAAAATCATGATTGAATTATTTTTTGCTTCGGTGGGTGGTAAAACA 15138 Query 7525 GCTTCATGTTCGCTGAATGTGAAGA-ATCCAATACCATCAATCTGTTTAAGCAGTGTCTC 7583 | ||| | | |||||| | || |||| ||||| | |||| |||||| || | || Sbjct 15139 GTTTCGTTCTGAGAGAATGT-ATGATATCCCATACCTTTAATCGGTTTAAATAGCTTTTC 15197 Query 7584 CAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAACCT 7643 || | | | ||| || ||||||| ||| |||||| | | |||||||| ||||| || Sbjct 15198 CAAGTAATCATATTTCGGTTGGTATAGACTCTTTGAAAACACGTATATATTTTCAAATCT 15257 Query 7644 CAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGATGG 7703 ||| || |||||| |||||||| | || |||| || || || ||||| ||||| Sbjct 15258 CAAGCCATTTGGACTCTCAATAAGACTTATCATTACATTAGTTTTCCCGCAGTTGGATGG 15317 Query 7704 CCC 7706 || Sbjct 15318 ACC 15320 >seq3589 Length=13643 Score = 116 bits (128), Expect = 7e-22 Identities = 326/495 (66%), Gaps = 9/495 (2%) Strand=Plus/Plus Query 7218 AAATCCATATTTA---TTCCAACATGCCGAGCATAAATCTC-TGAATGAGTTGTATGGCA 7273 ||||||||||||| ||||| ||| || || | || | |||| | || ||| Sbjct 2371 AAATCCATATTTATCCTTCCATCATTTTTGACA-AATTTTCGTAAATGTCTCATAATGCA 2429 Query 7274 TGTCCGTATTGACATGATCATCATAAATATGCTT--CAGATTCATTTCATCTTGACGGAA 7331 |||| | ||| |||||| | ||||||| | || ||| | ||||| || || Sbjct 2430 TGTCAGGCATGATATGATC--CCGAAATATGTGTCGCATATTTAAATCATCCTGTTTAAA 2487 Query 7332 CAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTG 7391 || | | | |||||||| || | || || || || ||||| |||||||| ||||| Sbjct 2488 CATAATAATTACATTTGCATTGTCCCGTATAAGATGTTTTGGTATCCGTGTATATGTTTG 2547 Query 7392 ACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTG 7451 ||| | ||| || |||| || ||||| |||||||| | |||| | | | || | Sbjct 2548 ACATAAATAAAAAGAATCAATATTTTTGTGACGACCCATACTGAAATATGATCCAATATT 2607 Query 7452 ATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTC 7511 ||| ||||| |||||||| ||||||| || | ||| | || ||| || || || Sbjct 2608 ATCTTGTTTCTCACAAGCCACATCGTAGAAAACCATGATTGAATTATTTTTTGCTTCGGT 2667 Query 7512 AGGCTTGATTACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTT 7571 || | |||| ||| | | |||||| | |||| ||||| | |||| |||| Sbjct 2668 GGGTGGTAAAACAGTTTCGTTCTGAGAGAATGTATAATATCCCATACCCTTAATCGGTTT 2727 Query 7572 AAGCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATAT 7631 | || | |||| | | | ||| || ||||||| ||| |||||| | | |||| Sbjct 2728 TAATAGCTTTTCCAAGTAATCATATTTCGGTTGGTATAGACTCTTTGAAAACACGTATAA 2787 Query 7632 ATTCTCAAACCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCC 7691 ||| ||||| || ||||| |||| | |||| ||| | || |||| || || || Sbjct 2788 ATTTTCAAATCTTAAACCATTTGCACTCTCAATTAGACTGATCATTACATTAGTTTTCCC 2847 Query 7692 ACAGTTTGATGGCCC 7706 ||||| ||||| || Sbjct 2848 GCAGTTGGATGGACC 2862 >seq2501 Length=12180 Score = 113 bits (124), Expect = 9e-21 Identities = 367/558 (66%), Gaps = 18/558 (3%) Strand=Plus/Minus Query 7164 GAATCCTTTCCGATACCTACCACTCTTCAAT-TCACTGTCTTTATCTATTACCACAAATC 7222 |||||| || | ||| | ||| | | |||| ||| | |||||| ||| | |||||| Sbjct 4270 GAATCCCTTTCTATATCGACCTTTAT-CAATATCATTATCTTTACTTATGAGAACAAATT 4212 Query 7223 CATATTTAT---TCCAACATGCCGAGCATAAATCTCTGAATGAGTTGTAT----GGCATG 7275 ||||||| | |||||||| || || |||| | | || | |||| | | ||| Sbjct 4211 CATATTTTTGCCTCCAACATTCCT--CACAAATTTTTAAA--AATTGTTTAAAAGACATA 4156 Query 7276 TC-CGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAG 7334 || | ||| |||||||||| |||||||| || | |||||||||||| || | || | Sbjct 4155 TCGCCTATA-ACATGATCATTGTAAATATGTTTAATATTCATTTCATCATGTTGAAAAAT 4097 Query 7335 CACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACA 7394 | | || || || || || | || | || || |||||| ||||| |||||||| Sbjct 4096 TATTATCAAATTAGCGTTGTCGCGTATTAAATGTTTCGGTATTTTCGTATAGGTTTGACA 4037 Query 7395 GAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATC 7454 ||||||||| ||| | | || || | ||||| |||||| || || | || || | Sbjct 4036 TAGATAGAAGGAGTCTATGTGTTTATGATGCCCCATACAGAAATAATCTCTTAT-TGCTG 3978 Query 7455 CT-GTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAG 7513 | | || ||||| || || ||||||||||| | |||| || |||| ||| | Sbjct 3977 TTTGCTTGTCACAGATTACGTCATCAAATATCATTATTGAGTGTGGTCTAGCTCTTTCTG 3918 Query 7514 GCTTGATTACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAA 7573 | ||| || ||| | || || ||||| | || || | ||| |||||| Sbjct 3917 GACTGACGACTTTTTCCTTGTCTGAAAACGTGAACATGTTTATCCCCTTAATTGGTTTAA 3858 Query 7574 GCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATAT 7633 || | || | | |||||||| || || | | || ||||| |||| ||||||| Sbjct 3857 TCAATTTCATTAAATATTGATACTTGGGCTGATACAACGATTTTGAATAAATGTATATAT 3798 Query 7634 TCTCAAACCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCAC 7693 | ||| | | || || ||| | | || | | | || ||||||||||||||| Sbjct 3797 TTCGAAATTTAAGTCCATTGGGACTTTCGATTAAACTTATCATTACATTCGTCTTTCCAC 3738 Query 7694 AGTTTGATGG-CCCGCAA 7710 | || ||||| ||| ||| Sbjct 3737 AATTAGATGGTCCCACAA 3720 Score = 96.9 bits (106), Expect = 7e-16 Identities = 159/223 (71%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 4474 AAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGT-TTAGATTTAGGTTTAGT 4532 ||| |||||||| | |||||||||| |||||| | |||||| || || | |||| | | Sbjct 1179 AAATATAATTATATAATTCACTATAGAAATTTACAGCAATGTCTTCGACATGGGTTGATT 1238 Query 4533 TCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATAT 4592 | | |||||||| || | | | || ||||||| ||||| | ||||| || |||||| Sbjct 1239 T-TAAAGAAAATTCATCGAATATTACAATTTGATCAATCTGCTTGGCTTCAAAAATATAT 1297 Query 4593 CGATAAAAATACCGCATGCC-GAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATA 4651 ||| |||| ||| | ||| | | || ||||| || ||||| || |||| | Sbjct 1298 TGATTGCAATAAT-CATCACAGAACATTGGCAGTTAATGATTTTGAAAAGAATTTTTC-A 1355 Query 4652 AATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694 || | | || ||||| || | ||| ||||| ||||||||||| Sbjct 1356 AACTGCTAAACAATGCAGTCTATGGTAAGACTATGGAGAATGT 1398 >seq5529 Length=16348 Score = 93.3 bits (102), Expect = 8e-15 Identities = 95/122 (78%), Gaps = 4/122 (3%) Strand=Plus/Plus Query 4576 TGGCTCAAATCATATATCGATAAAAATACCG--CATGCCGAAAACTAGCTAAGAATGAGT 4633 ||| | ||| ||||||| ||| |||||| ||| |||||| |||| || ||||| | Sbjct 7927 TGGTTAAAACCATATATTGATTTAAATACTAACCAT--CGAAAATTAGCCAAAAATGAAT 7984 Query 4634 TCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATG 4693 | |||||||| |||| ||| ||||||||||||| || | ||||| ||||||||||| | Sbjct 7985 TTGAAAAAAAATTTTTTAAGCTAATGAATAATGCCGTATACGGAAAAACGATGGAGAACG 8044 Query 4694 TA 4695 || Sbjct 8045 TA 8046 >seq966 Length=6413 Score = 91.5 bits (100), Expect = 3e-14 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 4613 GAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTT 4672 ||||||||||||| ||||| |||||||||| ||||| ||| ||||||||||||||| | | Sbjct 5182 GAAAACTAGCTAAAAATGATTTCGAAAAAA-CTTTTTTAAGTTAATGAATAATGCGATAT 5124 Query 4673 TTGGAAAGACGATGGAGAATGT 4694 ||| || || ||||| ||||| Sbjct 5123 ATGGGAAAACAATGGAAAATGT 5102 >seq1398 Length=1026 Score = 89.7 bits (98), Expect = 1e-13 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 4537 AAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGAT 4596 || ||||| ||| | | | |||||| ||||| ||| | ||| | ||||| ||| Sbjct 20 AAAAAAATTCACAGAATACTAAAATTTAGACAATCTTGTTGGTTAAAACCCTATATAGAT 79 Query 4597 AAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTA 4656 |||||| | ||||| ||||||| ||||| || |||||||| || ||||||||| Sbjct 80 TTAAATACAAAACATAGAAAATTAGCTAAAAATGAATTTGAAAAAAATTTCTATAAATTA 139 Query 4657 ATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATA-AAGATATA 4713 ||||||||||| | | ||||| || ||||| || || ||||| | | ||||||| Sbjct 140 ATGAATAATGCTATATACGGAAAAACTATGGAAAACGT-TGAAAAGAGACGAGATATA 196 >seq5375 Length=5031 Score = 82.4 bits (90), Expect = 1e-11 Identities = 93/122 (76%), Gaps = 6/122 (5%) Strand=Plus/Minus Query 4576 TGGCTCAAATCATATATCGATAAAAATACCG--CATGCCGAAAACTAGCTAAGAATGAGT 4633 ||| | ||| ||||||| ||| |||||| ||| | |||| |||| || ||||| | Sbjct 792 TGGTTAAAACCATATATTGATTTAAATACTAACCAT--CAAAAATTAGCCAAAAATGAAT 735 Query 4634 TCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATG 4693 | |||||||| |||| || ||||||||||||| || | ||||| ||||||||||| | Sbjct 734 TTGAAAAAAATTTTTT--AACTAATGAATAATGCCGTATACGGAAAAACGATGGAGAACG 677 Query 4694 TA 4695 || Sbjct 676 TA 675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97967729964082