Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5134 269 3e-67 >seq5134 Length=897107 Score = 269 bits (298), Expect = 3e-67 Identities = 1190/1870 (64%), Gaps = 28/1870 (1%) Strand=Plus/Plus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 || |||| |||||| || || | | | || || || || || || || ||||| || Sbjct 539121 TTATCCACTGTGAACTGGATAGCATTTGCAGCCGGCTTTGTGCGCAGGTAATACATCCCT 539180 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 ||||| ||||| |||| ||||| || || ||| || || ||| |||| Sbjct 539181 GTTTTGAGACCAGCTTTCCAGGAATAAAAGTGTATGGACGTCAGCTTTCCGTAATTCGGC 539240 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 ||||| | ||| ||||| | || ||||| || || ||||| || |||| ||||| ||| Sbjct 539241 TCTGCCACATGAATATTGAACGACTGACTCTGGTCTATGAACGCACCCCGATCTGCGGCC 539300 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 62224 ||||| ||| | | ||| | |||||||| | || || || | |||| | | Sbjct 539301 ATTTTAATGGTGGACTTCACCGAGATTTCCCACACGGTCTTGTACAGATCGCGAAC---C 539357 Query 62225 TTCTGG---AAGGTTTG--TATTCTGAATGGATCCACCATCT-GCCATAATCCTATTCTT 62278 |||||| | || | |||| || ||||| || || || | || ||| ||||| Sbjct 539358 TTCTGGGGAATGGACTCGATATTTTGGATGGAGCC-CCTGCTCGAGATGATCTGGTTCTT 539416 Query 62279 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 62338 || || || | ||| || | ||| |||| | || || | ||| | ||||| || Sbjct 539417 CATGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTCAGCAAATGATGGTTAACCAC 539476 Query 62339 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGA 62398 || || || ||||||| || | || ||||||||||| |||| || || || | || Sbjct 539477 CTGGAACTCGCCAGACAGCACGCGCCTGGTGTAAATATTTGTGGTGTAGGGCTCGAAGGA 539536 Query 62399 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62458 || || || |||| || |||||||| || || || ||||| || || || | | Sbjct 539537 TTCGTTGTTGCCCATTATCTGAGCAGTAGAGGCCGTGGGCATGGGAGCGACAAGCAGGGA 539596 Query 62459 ATTTCTAAGACCGT-ATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62517 || | | ||||| || | |||| || || || || ||| | ||| |||| || Sbjct 539597 GTTCCGGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTTTGCCAGTCCCACAGATTCG 539655 Query 62518 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62577 || | || ||||| || || || || || | | Sbjct 539656 TTGGCTCCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTCGT 539715 Query 62578 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62637 | || ||||| |||||||| ||| || ||||| || || || || | || ||||| | Sbjct 539716 AGGTTTCGTAGGGTCCTTCGATCTGCGCCAGTTCGCAGCTGGCTTCCAGGGCGCCGTAGT 539775 Query 62638 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 62697 | ||||| ||||| |||| || || | ||| ||| ||| ||| | || | Sbjct 539776 AGATGGTCTCGAATATCTGCTGGTTCAAGAGGCCTGCCTCCTCGCTTTCATAGGGGAATC 539835 Query 62698 TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62757 | |||||| | ||||| || ||||| |||||||| || || | ||| | ||| ||| Sbjct 539836 GCATGAGAATCAGGGCGTCAGCGAATCCCTGAACACCGATGCCCACAGGGCGATGCCTCA 539895 Query 62758 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62817 || || | | || ||||| | |||||| | || || || || || || ||||||| Sbjct 539896 AGTTGGACTTCTTTGCCTCTGGCAGGGGATAAAAGTTGATGTCGATGATCTTGTTGAGAT 539955 Query 62818 TTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TC-GCCCATCTA 62874 || || | ||| || ||||| || || || ||| | || | | | Sbjct 539956 TTTTGGTCACCGTCTTGGTAACTTCCTTGAGCTTCTTGAAGTCATACGTCTTCTCGGGTG 540015 Query 62875 TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62934 | |||||||| || | ||| | || |||| || || ||||| | ||||| || | Sbjct 540016 TGACAAACATATTGAGGGCGATCGAGGCCAAGTTGCAGACGGCAATCTCATCAGGCGAGG 540075 Query 62935 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 62994 || | | || || ||||| | || || |||||||| || || | ||| || || | Sbjct 540076 AGTACTCGACGATTTCGGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGT 540135 Query 62995 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63054 | ||||| ||| || |||||||| | || ||| | || | |||||||| | ||||| Sbjct 540136 TGCTCTTCCGGTTGCAGGCATCCTTGAACAGCATGTAGGGGTTCCCAGTTTCCACCTGAG 540195 Query 63055 ATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTA-TTATAGATTTGTATCTCCTTTC 63112 || || || || ||| | |||| ||||||| | | | || | | || | Sbjct 540196 CCTCAATGATGGCGAACCAAAGGGACT-GAGCCTTCACCGTTCGGTTGGCACGACC---C 540251 Query 63113 TCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170 |||| ||||| ||||| | ||||||||| || ||||| |||| || | || Sbjct 540252 TCTTGCTCGTACTTCTCGTACAACCTTTCGAACTCATCGCCCCACACATCGTGAAGGCCG 540311 Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63230 || |||| | || ||||| | |||||| || || | ||| || || ||||||||| Sbjct 540312 GGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCGACGCGCTTCATAAAG 540371 Query 63231 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63290 ||||| || ||||| || || || ||||| | || | | ||||| || || || Sbjct 540372 AGATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGGTTCTCCTCCTTGCCGGTG 540431 Query 63291 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63350 ||||| || || || |||||| | | | || || ||||| || |||| ||| ||||| Sbjct 540432 TTCTTCTTCAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCA 540491 Query 63351 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63410 | | || || || ||| || |||||||| | || | || || || | || Sbjct 540492 AAGGCGCCGGGACGCTTGCCGCCGCCCTGATCCACATAACGTGCCACATTGTTGAAGACC 540551 Query 63411 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTG 63470 |||| ||| |||| | || || || | || || || ||| | || || | || | Sbjct 540552 CTCAGCATGGGAACGAGGCCATTGGAGGTGCCGTTCGTGCCGCAAATCGAGGTGCCCTTC 540611 Query 63471 GCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63528 || || || | | ||| ||| || || || || ||| || ||||| | |||| Sbjct 540612 GCCCGGATGCAGTGGACATT--TAGCCCGATGCCGCCAGCCGACTTCGAGATCATGGCGC 540669 Query 63529 ATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63588 | | | | | | | || ||||| ||| || | ||||| | || || |||| Sbjct 540670 ACTGCTCCACGGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTGAGGAGGAAAC 540729 Query 63589 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648 | |||| || | ||| | || | || ||| | || || || || || || | Sbjct 540730 ACGAGGACAGCTGCGGCCGATTCGTGGCAGCGGCAAAAAGTGTGGGCGACGCATGGGTGA 540789 Query 63649 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63708 | | || || | ||||| ||||| || | |||| || |||||| || | Sbjct 540790 AGTAACGCTCCGACAAGAGATTATACGTTTCCACGGCTGCATCGATATCCTCCCCGTGTA 540849 Query 63709 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63768 |||| | || || ||||| | ||||||||| || | || |||||||| |||| | | Sbjct 540850 TTCCGATCGCCACGCGCATCAGCATGTGCTGCGGGCGCTCGGCGATCTTGCCGTTTCTCT 540909 Query 63769 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63828 ||| ||| ||||| ||| | || || || ||||| |||||||| |||||| || | Sbjct 540910 TCAGCAAATAGGAACGTTCGAGGGTCTTGAACCCAAAGTAGTTGTACCCAAAGTCGCGAT 540969 Query 63829 CGTAAATAAT 63838 ||||||| || Sbjct 540970 CGTAAATTAT 540979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622902558046280