Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5134 217 4e-51 >seq5134 Length=897107 Score = 217 bits (240), Expect = 4e-51 Identities = 672/1039 (65%), Gaps = 3/1039 (0%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || ||||||||||| ||| | ||||| || || || || || || | |||| | ||| Sbjct 540889 GAGCGCCCGCAGCACATGCTGATGCGCGTGGCGATCGGAATACACGGGGAGGATATCGAT 540830 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACA 363567 || || | ||||| ||||| || | | ||| ||||| || || |||| ||| Sbjct 540829 GCAGCCGTGGAAACGTATAATCTCTTGTCGGAGCGTTACTTCACCCATGCGTCGCCCACA 540770 Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627 | | |||| || | || ||| |||| || || || || || | |||| | Sbjct 540769 CTTTTTGCCGCTGCCACGAATCGGCCGCAGCTGTCCTCGTGTTTCCTCCTCACCATGACG 540710 Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687 | ||| ||||||||||| || || | | | || | || || | || || ||| Sbjct 540709 GCCGACTCCATCGAGGGCATTTTCAAGTCCGTGGAGCAGTGCGCCATGATCTCGAAGTCG 540650 Query 363688 GCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGC 363747 || ||||| || || || ||||| | || || || || | ||| ||||| Sbjct 540649 GCTGGCGGCATCGGGCTAAATGTCCACTGCATCCGGGCGAAGGGCACCTCGATTTGCGGC 540590 Query 363748 ACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGG 363807 || || ||| ||||| || ||||||||||| | || || ||||| || | Sbjct 540589 ACGAACGGCACCTCCAATGGCCTCGTTCCCATGCTGAGGGTCTTCAACAATGTGGCACGT 540530 Query 363808 TACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCAT 363867 || || || ||||| || || ||||| || || ||||| || || || ||||| Sbjct 540529 TATGTGGATCAGGGCGGCGGCAAGCGTCCCGGCGCCTTTGCCATTTACCTGGAGCCCTGG 540470 Query 363868 CATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGT 363927 || | || | |||||||| || || || ||| ||||| || || ||||| || Sbjct 540469 CACTCGGACGTCTTTGAGTTCCTGGAACTGAAGAAGAACACCGGCAAGGAGGAGAACCGC 540410 Query 363928 GCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCA 363987 || || ||||||||||| || || ||| | | || | |||||||||||||| ||||| Sbjct 540409 GCCCGCGATCTGTTCTACGCCCTGTGGATACCCGATCTCTTTATGAAGCGCGTCGAGGCC 540350 Query 363988 GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGT 364047 | ||||||| ||| | ||||| ||| |||| || || ||| |||||| ||||| Sbjct 540349 AATGGCGATTGGTCGCTCATGTGCCCCCACAAATGCCCCGGCCTTCACGATGTGTGGGGC 540290 Query 364048 GACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATT 364107 || || | | | ||||| ||||| || ||||| || || | Sbjct 540289 GATGAGTTCGAAAGGTTGTACGAGAAGTACGAGCAAGAGGGTCGTGCCAACCGAACGGTG 540230 Query 364108 CCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTAT 364167 || ||| || ||||| |||||||| || | ||| | || || || | ||||| Sbjct 540229 AAGGCTCAGTCCCTTTGGTTCGCCATCATTGAGGCTCAGGTGGAAACTGGGAACCCCTAC 540170 Query 364168 ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAG 364227 ||| ||| ||| ||| | |||||||| ||| |||||||||| | | || || || || Sbjct 540169 ATGCTGTTCAAGGATGCCTGCAACCGGAAGAGCAACCAGCAGAATGTCGGCACCATCAAG 540110 Query 364228 CAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGT 364287 |||||| | || ||||| || | || ||| || | || || |||| |||||| || Sbjct 540109 TGCAGCAACTTGTGCACCGAAATCGTCGAGTACTCCTCGCCTGATGAGATTGCCGTCTGC 540050 Query 364288 AACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA---GATGGTACTTTTGACCACCAG 364344 ||| | || |||||||| || |||||| | | || || | |||| | || Sbjct 540049 AACTTGGCCTCGATCGCCCTCAATATGTTTGTCACACCCGAGAAGACGTATGACTTCAAG 539990 Query 364345 CATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAAT 364404 | || | || || ||| | | || |||||| ||||| | ||||||| || Sbjct 539989 AAGCTCAAGGAAGTTACCAAGACGGTGACCAAAAATCTCAACAAGATCATCGACATCAAC 539930 Query 364405 TATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGT 364464 | |||||| | || || || || || || || | |||||||| | || | ||| Sbjct 539929 TTTTATCCCCTGCCAGAGGCAAAGAAGTCCAACTTGAGGCATCGCCCTGTGGGCATCGGT 539870 Query 364465 GTACAGGGCCTCGCTGACG 364483 || ||||| ||||||||| Sbjct 539869 GTTCAGGGATTCGCTGACG 539851 Score = 116 bits (128), Expect = 1e-20 Identities = 299/447 (67%), Gaps = 14/447 (3%) Strand=Plus/Minus Query 364717 AAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCA 364776 ||| |||| ||| || |||||||| || || |||||||||||||| |||||||| Sbjct 539617 AAGCAGCACGGTGTCCGGAACTCCCTGCTTGTCGCTCCCATGCCCACGGCCTCTACTGCT 539558 Query 364777 CAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGG 364836 ||||| | || |||||||| | |||||| || | || | ||| |||| | | || Sbjct 539557 CAGATAATGGGCAACAACGAATCCTTCGAGCCCTACACCACAAATATTTACACCAGGCGC 539498 Query 364837 GTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGC 364896 || || || || || || | ||| ||||| | | | | | ||| || | || | Sbjct 539497 GTGCTGTCTGGCGAGTTCCAGGTGGTTAACCATCATTTGCTGAGGGACCTAACGGAGCTG 539438 Query 364897 GGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAAC 364956 | |||||| ||| |||||||||| | |||||| | | || || | || || Sbjct 539437 GACTTGTGGGACGACGACATGAAGAACCAGATCATCTCGAGCAGGGGCTCCATCCAAAAT 539378 Query 364957 ATTCCAG--GATT-TCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCC 365013 | || || ||| ||||||| | | | | ||||| ||||| |||||||| || Sbjct 539377 A-TCGAGTCCATTCCCCAGAAGGTTCG--CGATCTGTACAAGACCGTGTGGGAAATCTC- 539322 Query 365014 ATGCGAACTC--TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGT 365071 | ||| || |||| | ||||| || ||||| ||||| || || ||||| |||| Sbjct 539321 -GGTGAAGTCCACCATTAAAATGGCCGCAGATCGGGGTGCGTTCATAGACCAGAGTCAGT 539263 Query 365072 CGTTTAACGTATTCA--TGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTA 365129 |||| || |||||| || | |||| | | || ||||| || ||||| || || || Sbjct 539262 CGTTCAA--TATTCATGTGGCAGAGCCGAATTACGGAAAGCTGACGTCCATACACTTTTA 539205 Query 365130 CGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||||| | ||||| || ||||| Sbjct 539204 TTCCTGGAAAGCTGGTCTCAAAACAGG 539178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303257863383206