Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4121 91.5 1e-13 seq5136 86.0 5e-12 seq5134 86.0 5e-12 >seq4121 Length=254077 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 |||||||||| | ||||| || || || ||||| || | || || | || ||||| | Sbjct 190409 CAAAATGCAAATTTTTGTGAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTCGAACC 190350 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||| ||||||||| | ||||| ||||| ||||| || || || ||||| || Sbjct 190349 CTCCGATACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCTCCAGA 190290 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | ||||| | || || ||||| || || || | | | | | |||||| Sbjct 190289 TCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTA 190230 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||| || || || || || |||| || || Sbjct 190229 TAACATCCAGAAGGAGTCCACCCTTCACTTGGT 190197 >seq5136 Length=173398 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || || || ||||| | || ||| | ||||||||| | Sbjct 116118 AATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTCGAGCCATC 116059 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | || || ||||| ||||| || || || ||||| ||||| Sbjct 116058 CGACACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGATCA 115999 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || ||||| ||||| || || | | | | | |||||| || Sbjct 115998 GCAGCGTCTCATCTTCGCTGGCAAACAACTGGAGGACGGACGCACCCTGTCCGATTACAA 115939 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || || || ||||| | ||||| || Sbjct 115938 CATCCAGAAGGAGTCTACCCTCCATTTGGT 115909 >seq5134 Length=897107 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | |||||| |||||| ||||||||||| || ||||| ||||| Sbjct 635767 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 635826 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || |||||||| || ||||||| | | | | || || |||||| Sbjct 635827 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 635886 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || || || | || || ||| Sbjct 635887 ATTCAGAAGGAGTCCACTTTGCACTTGGTG 635916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429905959968615