Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq5136 102 7e-17 seq3746 102 7e-17 seq4121 87.8 1e-12 >seq5136 Length=173398 Score = 102 bits (112), Expect = 7e-17 Identities = 185/267 (69%), Gaps = 8/267 (3%) Strand=Plus/Plus Query 16672 TTTATTTTAAAATGTATTATTGTTTAGCC-GCATTTACCCTCCTCGTAGCCTCAGTACCA 16730 ||||||| ||||||||| || |||| | ||| ||||| || || | || |||| Sbjct 114944 TTTATTTGGAAATGTATTCAGTTTAAGCCTGGATT---CCTCCGCGAAGACGGAGCACCA 115000 Query 16731 TATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATT 16790 |||| ||||||||||| || ||||||||||||| || || ||||||||| || Sbjct 115001 AGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCCAGTT 115060 Query 16791 GTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAAT 16848 | || || || | || || ||||| || || || | ||||| || || || | Sbjct 115061 GCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGGATCT 115120 Query 16849 TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCC 16908 | || ||| || | | | |||||| ||||| ||||| ||||||||||||||| Sbjct 115121 TGGC--CTTTACATTCTCGATGGTGTCGGATGGCTCGACTTCCAGGGTGATGGTTTTTCC 115178 Query 16909 GGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || || || || ||||| Sbjct 115179 GGTCAAAGTCTTCACGAAGATTTGCAT 115205 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| |||| |||||||| || || ||||| || |||| | Sbjct 116119 CCTCCACGAAGACGGAGAACCAAGTGCAAAGTGGACTCTTTCTGGATGTTATAATCGGAC 116178 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||||||||||||||| || ||| | || | ||||| || || || Sbjct 116179 AGGGTGCGTCCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGG 116238 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || || || |||| |||||| | | | || ||| ||| || Sbjct 116239 ATTCCTTCCTTATCCTGGATTTTAGCCTTCACATTCTCGATGGTATCGGAGGGTTCGACC 116298 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||||||||| || || || || ||||| ||||||||| Sbjct 116299 TCCAAGGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAGATCTGCATT 116346 >seq3746 Length=358675 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||||| || ||| ||||| Sbjct 174185 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCC 174244 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || || ||||| || ||| || | |||||| ||||| Sbjct 174245 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 174304 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| |||| |||||||| Sbjct 174305 TGGATCTTGGC--CTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGG 174362 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || ||||| ||||| || ||||| Sbjct 174363 TCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 174396 >seq4121 Length=254077 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || ||||||||||| || ||||| || |||| | Sbjct 189267 CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGAC 189326 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||||| || || || || | || || ||||| || || ||| Sbjct 189327 AAGGTGCGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGG 189386 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | || ||| |||||| Sbjct 189387 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTATCGGAGGGCTCAA 189444 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| ||||| ||||||||||| || || || || |||||||| Sbjct 189445 CCTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189493 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || ||||||||||| || ||||| || |||| | Sbjct 190179 CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGAC 190238 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||||| || || || || | || || ||||| || || ||| Sbjct 190239 AAGGTGCGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGG 190298 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | || ||| ||| || Sbjct 190299 ATTCCCTCCTTGTCCTGGATCTTAGC--CTTGACATTCTCGATGGTATCGGAGGGTTCGA 190356 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| |||||||| || || |||| || || |||||||| ||||||||| Sbjct 190357 CCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATTTGCATTTTG 190409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405059696121670