Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4865 168 4e-37 seq3411 136 3e-27 seq3961 134 9e-27 seq4714 131 1e-25 seq2040 129 4e-25 seq5136 111 1e-19 seq4121 109 4e-19 seq1030 98.7 7e-16 seq3385 93.3 3e-14 seq1799 89.7 3e-13 seq1123 89.7 3e-13 seq5134 87.8 1e-12 >seq4865 Length=1237233 Score = 168 bits (186), Expect = 4e-37 Identities = 167/214 (78%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| | ||||| || || | |||| ||||| ||||| |||||||| ||||| Sbjct 32164 ATGGCCACCGTAAACGTTAACCGCAGTGTGACGGACATCTTCTATCGCTACAAGATGCCA 32223 Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279 || ||||| || ||||||||||| ||||||||||| || || ||||| ||||||||| Sbjct 32224 CG--TCTGCAGGCGAAGGTCGAGGGCAAGGGAAACGGCATAAAGACCGTTCTTGTCAACA 32281 Query 6280 TGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGT 6339 || | ||||| || ||| |||||||||| |||||||| ||||| ||||| || || | Sbjct 32282 TGGCCGAAGTGGCCCGGGCCATCGGACGCCCGGCCACCTATCCGACTAAATACTTTGGCT 32341 Query 6340 GCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 |||| | ||||| ||||| | ||| |||||||| Sbjct 32342 GCGAGTTGGGCGCCCAGACTCTGTTCGATCACAA 32375 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC-CAAGCTGCAGGACTTACTTGA 6433 ||||| ||||| | || || |||||||| | | || ||||||||| || || | || Sbjct 32648 AACGAACGCTTTGTGGTAAATGGATCGCACGA-TGTGAACAAGCTGCAAGATCTATTGGA 32706 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTAT 6493 ||| ||||||||||| ||||| || || | || ||||| || ||||||||| | | | Sbjct 32707 CGGTTTTATTCGCAAATTTGTCCTATGCCCCGAGTGCGACAATCCGGAGACCAATTTGAC 32766 Query 6494 TGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAA 6553 ||| || |||||| | ||||| || ||| ||||| || ||||| | ||| || Sbjct 32767 TGTTTCGGCCAAGAACCAGACCATTTCGCAGTCATGCAAGGCATGCGGCTTCCACGGTCT 32826 Query 6554 GCTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 |||| | | |||||| | ||||| ||||| ||||||| |||||| Sbjct 32827 GCTGAAGGTCAACCACAAAGTTAACACGTTCATTGTGAAGAACCCTCCA 32875 >seq3411 Length=1051 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 838 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 897 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 898 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 932 >seq3961 Length=22959 Score = 134 bits (148), Expect = 9e-27 Identities = 86/94 (91%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 9587 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 9646 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 |||||| ||||||||||||||||||||||||||| Sbjct 9647 TAATCCATTCATGCGCGTCACTAATTAGATGACG 9680 Score = 107 bits (118), Expect = 1e-18 Identities = 76/87 (87%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 25905 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAA 25959 ||| || |||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 4604 CCCCTTTCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGTTAG 4545 Query 25960 TCCTTTCATGCGCGTCACTAATTAGAT 25986 ||| ||||||||||||||||||||||| Sbjct 4544 TCCATTCATGCGCGTCACTAATTAGAT 4518 Score = 104 bits (114), Expect = 2e-17 Identities = 75/87 (86%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 25905 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAA 25959 ||| || |||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 2547 CCCCTTTCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGTTAA 2488 Query 25960 TCCTTTCATGCGCGTCACTAATTAGAT 25986 ||| |||||||| ||||||||| |||| Sbjct 2487 TCCATTCATGCGAGTCACTAATAAGAT 2461 >seq4714 Length=25476 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| Sbjct 20810 AAGCCCGTTCCCTTGGCTGTGGATTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 20751 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 20750 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 20716 >seq2040 Length=7852 Score = 129 bits (142), Expect = 4e-25 Identities = 87/96 (91%), Gaps = 6/96 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 7325 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 7384 Query 25957 T-AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||||| |||||||||||||||||||||||||||| Sbjct 7385 TAAATCCATTCATGCGCGTCACTAATTAGATGACGA 7420 >seq5136 Length=173398 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| || | |||| ||| || || || || ||||| |||| ||| |||| || Sbjct 116137 ACCAAGTGCAAAGTGGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGTCCGTCCTCC 116196 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||||||||||||||| || | || || ||||| | ||||| ||||| || ||| Sbjct 116197 AATTGTTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTATCCTGG 116256 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||||||||||| || ||||| ||| || || || || || ||||| Sbjct 116257 ATTTTAGCCTTCACATTCTCGATGGTATCGGAGGGTTCGACCTCCAAGGTGATGGTTTTT 116316 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||| ||||| || |||||||| Sbjct 116317 CCAGTGAGGGTCTTCACAAAGATCTGCAT 116345 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||||||||||||||| | ||| ||||| || || ||||| |||| Sbjct 115433 TACCACCACGAAGACGCAACACCAAATGCAAAGTCGATTCCTTCTGGATGTTGTAGTCAG 115492 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| | || || | || ||||| || || || || || || ||||| | || Sbjct 115493 AAAGAGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGG 115552 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || ||||| ||||| ||||||||||| | ||||| || | Sbjct 115553 GGATTCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGA 115612 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || ||||| || || | ||| |||||||| |||||||| Sbjct 115613 CCTCCAGGGTGATTGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 115661 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| || | |||| |||||| || || ||||| || || | ||| | || || Sbjct 115225 ACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGTCCATCTTCA 115284 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || |||||||| || || | || || ||||| | ||||| ||| || ||||| Sbjct 115285 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGG 115344 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||||||||||| || ||||| ||| || || | || || || || Sbjct 115345 ATTTTAGCCTTCACATTCTCGATGGTATCAGAGGGTTCGACCTCCAGGGTGATGGTCTTG 115404 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || ||||||||||||||||| Sbjct 115405 CCAGTCAAAGTCTTCACGAATATCTGCAT 115433 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| ||||| || |||||| || || || ||||| | Sbjct 115661 TACCACCACGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAATCGG 115720 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | |||| | || || | ||||||||||| || || | || || || || | || Sbjct 115721 ACAGAGTACGTCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGG 115780 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || ||| ||| || ||| || || | || || ||| | |||| Sbjct 115781 GAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTTTTCGATGGTGTCTGAAGGCTCAA 115840 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||||||| || ||||| || ||||| Sbjct 115841 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 115889 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| ||| ||||| || || ||||| || |||| ||| | || || Sbjct 116821 ACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCG 116880 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || |||||||| || || | || || || || | ||| | || || || ||| Sbjct 116881 AGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGG 116940 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||||||||||| | ||||| | || || || || || || || || Sbjct 116941 ATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCCACCTCCAAGGTGATGGTCTTG 117000 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || |||||||| ||||| || ||||||||||| Sbjct 117001 CCAGTCAAGGTCTTCACAAAGATCTGCATGTT 117032 >seq4121 Length=254077 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | ||||||||| | ||| |||||| || || ||||| |||| Sbjct 189949 TACCACCACGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAG 190008 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| |||| || | || || ||||| || || | || || ||||| | | Sbjct 190009 AAAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAG 190068 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || ||||||||||| || ||||| ||||| Sbjct 190069 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCAGAGGGTTCAA 190128 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || || || || || || || |||| ||| || ||||| ||||||||| Sbjct 190129 CCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATG 190178 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||||| ||||| ||||| ||| |||||| || || || ||||| ||| Sbjct 189267 CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGAC 189326 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| |||| || | || ||||| || || || || || || ||||| | ||| Sbjct 189327 AAGGTGCGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGG 189386 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || |||||| || || ||||||||||| | ||||| ||||| Sbjct 189387 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAGGGCTCAACC 189446 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| || || || |||| || |||||||| |||||||| Sbjct 189447 TCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189493 >seq1030 Length=1680 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 468 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 409 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 408 GGTTATATTTAG 397 >seq3385 Length=1144 Score = 93.3 bits (102), Expect = 3e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGG-TACTTGTTCGCTATCGGTCTCG 20005 |||||| |||| ||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 56 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTTACTTGTTTACTATCGGTCTCA 115 Query 20006 CGGTAATATTTAG 20018 ||| |||||||| Sbjct 116 TGGTTATATTTAG 128 >seq1799 Length=1118 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 661 CTCTCTATTCAGAGTTCTTTTCAACTTTCGTTCACGGTACTTGTTTACTATCGGTCTCAT 602 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 601 GGTTATATTTAG 590 >seq1123 Length=1389 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/71 (89%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTT-CCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 440 CTCTCTATTCAGAGTTCTTTTCAACTTTTCCCTCACGGTACTTGTTTACTATCGGTCTCA 381 Query 20006 CGGTAATATTT 20016 ||| |||||| Sbjct 380 TGGTTATATTT 370 >seq5134 Length=897107 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || |||| |||||| || | |||| |||||| ||||| || || ||||| Sbjct 635934 ACCACCACGCAGGCGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 635875 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | || | || || | || || || || || || || || || ||||| | || Sbjct 635874 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 635815 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||||||||| ||| || || ||||| | || |||||| | ||| || Sbjct 635814 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGAC 635755 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || ||||| | ||| || ||||| |||||||| || Sbjct 635754 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 635704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334923796925123