Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5134 280 2e-70 >seq5134 Length=897107 Score = 280 bits (310), Expect = 2e-70 Identities = 1196/1873 (64%), Gaps = 34/1873 (2%) Strand=Plus/Plus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 || |||| |||||| || || | | | || || || || || || || ||||| || Sbjct 539121 TTATCCACTGTGAACTGGATAGCATTTGCAGCCGGCTTTGTGCGCAGGTAATACATCCCT 539180 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||| ||||| |||| ||||| || || ||| || || ||| |||| Sbjct 539181 GTTTTGAGACCAGCTTTCCAGGAATAAAAGTGTATGGACGTCAGCTTTCCGTAATTCGGC 539240 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 ||||| | ||| ||||| | || ||||| || || ||||| || |||| ||||| ||| Sbjct 539241 TCTGCCACATGAATATTGAACGACTGACTCTGGTCTATGAACGCACCCCGATCTGCGGCC 539300 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 62079 ||||| || | | ||| | |||||||| | || || || | |||| | | Sbjct 539301 ATTTTAATGGTGGACTTCACCGAGATTTCCCACACGGTCTTGTACAGATCGCGAAC---C 539357 Query 62080 TTCTGG---AAGGTTTG--TATTCTGAATGGATCCACCATCT-GCCATAATCCTATTCTT 62133 |||||| | || | |||| || ||||| || || || | || ||| ||||| Sbjct 539358 TTCTGGGGAATGGACTCGATATTTTGGATGGAGCC-CCTGCTCGAGATGATCTGGTTCTT 539416 Query 62134 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 62193 || || || | ||| || | ||| |||| | || || | ||| | ||||| || Sbjct 539417 CATGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTCAGCAAATGATGGTTAACCAC 539476 Query 62194 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 62253 || || || ||||||| || | || ||||||||||| |||| || || || | || Sbjct 539477 CTGGAACTCGCCAGACAGCACGCGCCTGGTGTAAATATTTGTGGTGTAGGGCTCGAAGGA 539536 Query 62254 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62313 || || || |||| || |||||||| || || || ||||| || || || | | Sbjct 539537 TTCGTTGTTGCCCATTATCTGAGCAGTAGAGGCCGTGGGCATGGGAGCGACAAGCAGGGA 539596 Query 62314 ATTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62372 || | | ||||| || | |||| || || || || ||| | ||| |||| || Sbjct 539597 GTTCCGGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTTTGCCAGTCCCACAGATTCG 539655 Query 62373 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62432 || | || ||||| || || || || || | | Sbjct 539656 TTGGCTCCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTCGT 539715 Query 62433 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62492 | || ||||| |||||||| ||| || ||||| || || || || | || ||||| | Sbjct 539716 AGGTTTCGTAGGGTCCTTCGATCTGCGCCAGTTCGCAGCTGGCTTCCAGGGCGCCGTAGT 539775 Query 62493 AAATGGTTTCGAAGATCTTCTTATTTA-GAT-CTTGCGCTTCCAGGCTATCAAATGGATA 62550 | ||||| ||||| |||| || || | || | ||| ||| ||| ||| | || | Sbjct 539776 AGATGGTCTCGAATATCTGCTGGTTCAAGAGGCCTGCC--TCCTCGCTTTCATAGGGGAA 539833 Query 62551 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62610 | |||||| | ||||| || ||||| |||||||| || || | ||| | ||| || Sbjct 539834 TCGCATGAGAATCAGGGCGTCAGCGAATCCCTGAACACCGATGCCCACAGGGCGATGCCT 539893 Query 62611 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62670 | || || | | || ||||| | |||||| | || || || || || || ||||| Sbjct 539894 CAAGTTGGACTTCTTTGCCTCTGGCAGGGGATAAAAGTTGATGTCGATGATCTTGTTGAG 539953 Query 62671 ATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC--- 62727 |||| || | ||| || ||||| || || || ||| | | || Sbjct 539954 ATTTTTGGTCACCGTCTTGGTAACTTCCTTGAGCTTCTTGAAGTCATACGTCTTCTCGGG 540013 Query 62728 TATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 62787 | | |||||||| || | || | || |||| || || ||||| | ||||| || Sbjct 540014 TGTGACAAACATATTGAGGGCGATCGAGGCCAAGTTGCAGACGGCAATCTCATCAGGCGA 540073 Query 62788 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 62847 | || | | || || ||||| | || || ||||||||||| || | ||| || || Sbjct 540074 GGAGTACTCGACGATTTCGGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTG 540133 Query 62848 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 62907 || ||||| ||| || |||||||| | || ||| | || | |||||||| | ||| Sbjct 540134 GTTGCTCTTCCGGTTGCAGGCATCCTTGAACAGCATGTAGGGGTTCCCAGTTTCCACCTG 540193 Query 62908 AGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATA-GATTTGTAT--CTCT 62963 || || || || || ||| | | ||| ||||||| | | | || | | | || Sbjct 540194 AGCCTCAATGATGGCGAACCAAAGGGACT-GAGCCTTCACCGTTCGGTTGGCACGACCCT 540252 Query 62964 TTT-CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGT 63022 || ||| | | | | || |||| | ||||||||| || ||||| |||| || || Sbjct 540253 CTTGCTCGTACTTCTCGT----ACAACCTTTCGAACTCATCGCCCCACACATCGTGAAGG 540308 Query 63023 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63082 || || |||| | || ||||| | |||||| || || | ||| || || |||||| Sbjct 540309 CCGGGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCGACGCGCTTCATA 540368 Query 63083 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63142 |||||||| || ||||| || || || ||||| | || | | ||||| || || Sbjct 540369 AAGAGATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGGTTCTCCTCCTTGCCG 540428 Query 63143 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63202 || ||||| || || || |||||| | | | || || ||||| || |||| ||| ||| Sbjct 540429 GTGTTCTTCTTCAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATG 540488 Query 63203 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63262 || | | || || || ||| || |||||||| | || | || || || | Sbjct 540489 GCAAAGGCGCCGGGACGCTTGCCGCCGCCCTGATCCACATAACGTGCCACATTGTTGAAG 540548 Query 63263 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCA 63322 || |||| ||| |||| | |||||||| || || || || || | || || | || Sbjct 540549 ACCCTCAGCATGGGAACGAGGCCATTGGAGGTGCCGTTCGTGCCGCAAATCGAGGTGCCC 540608 Query 63323 CTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63380 | || || || | | ||| ||| || || || || ||| || ||||| | | Sbjct 540609 TTCGCCCGGATGCAGTGGACATT--TAGCCCGATGCCGCCAGCCGACTTCGAGATCATGG 540666 Query 63381 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 63440 |||| | | | | | | |||||||| || || || ||||| | || || | Sbjct 540667 CGCACTGCTCCACGGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTGAGGAGGA 540726 Query 63441 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAG 63500 |||| |||| || | ||| | || | || ||| | || || || || || | Sbjct 540727 AACACGAGGACAGCTGCGGCCGATTCGTGGCAGCGGCAAAAAGTGTGGGCGACGCATGGG 540786 Query 63501 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63560 | || | || || | ||||| ||||| || | |||| || |||||| | Sbjct 540787 TGAAGTAACGCTCCGACAAGAGATTATACGTTTCCACGGCTGCATCGATATCCTCCCCGT 540846 Query 63561 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63620 | ||||| | || || ||||| | ||||||||| || | || |||||||| |||| Sbjct 540847 GTATTCCGATCGCCACGCGCATCAGCATGTGCTGCGGGCGCTCGGCGATCTTGCCGTTTC 540906 Query 63621 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63680 | |||| ||| ||||| ||| | || || || ||||| |||||||| |||||| | Sbjct 540907 TCTTCAGCAAATAGGAACGTTCGAGGGTCTTGAACCCAAAGTAGTTGTACCCAAAGTCGC 540966 Query 63681 GTTCGTAAATAAT 63693 | |||||||| || Sbjct 540967 GATCGTAAATTAT 540979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633586592346800