Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5566 143 2e-29 seq5136 113 4e-20 seq4121 107 2e-18 seq5134 82.4 7e-11 >seq5566 Length=752539 Score = 143 bits (158), Expect = 2e-29 Identities = 205/289 (71%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 50989 AACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTCT 51048 ||||| ||| |||||| |||||||| |||| | |||| || || ||| || Sbjct 125947 AACTTGCGCCGGCAGCCCTGATAGTTCATGTACCGCACCTTGCCGAATATCGCGCGCTCC 126006 Query 51049 TTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGGA 51108 || | | ||||||| ||||||| ||| |||||||| || || ||||| ||| ||| Sbjct 126007 TTCCAGCCCATGTCGTGGACACCGCCAATGGACCACATGCAGCCGACATAGCCGTTGGGA 126066 Query 51109 TCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTCT 51168 ||||| || || | |||||| | ||||| | | || ||||| ||| ||| || Sbjct 126067 TCGCGTCCGTCGAGGCTGTACTTGTCGTTCAACAGAATCGCATACTCCAGCGCCTGTTCC 126126 Query 51169 GCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATC 51228 | | | ||||| || | ||| || ||||||||||||||||||| | ||||||||| Sbjct 126127 GGGGTGGCGGTCCACTCGAGAATCTTTTTGGCCCAGTACATGCGCAGAAAGCCGTGCATC 126186 Query 51229 TTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277 |||||||||| |||||| ||| || |||||||| | ||||||| Sbjct 126187 TTGCCCTCGCGCACCAGCTGCAGTTGCGCGGAGTTCCAAAGGTCGTCGT 126235 >seq5136 Length=173398 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || |||||||||||||| || ||||||| | ||||| ||| | || Sbjct 116118 AATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTCGAGCCATC 116059 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | ||| || ||| ||||| || || || || || || || Sbjct 116058 CGACACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGATCA 115999 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || ||||||||| | || || | ||||| || ||||||||| Sbjct 115998 GCAGCGTCTCATCTTCGCTGGCAAACAACTGGAGGACGGACGCACCCTGTCCGATTACAA 115939 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || || || ||||| || || | || | ||||||| Sbjct 115938 CATCCAGAAGGAGTCTACCCTCCATTTGGTCCTCCGTCTTCGTGGAGGAA 115889 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||||||||| ||| ||||||| | ||||| ||| | || Sbjct 115205 ATGCAAATCTTCGTGAAGACTTTGACCGGAAAAACCATCACCCTGGAAGTCGAGCCATCC 115146 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| || || || || ||||| || || || Sbjct 115145 GACACCATCGAGAATGTAAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGATCAG 115086 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || ||| | || || | || ||| || ||| ||||| Sbjct 115085 CAGCGTCTCATCTTCGCCGGAAAGCAACTGGAGGACGGACGTACTCTGTCCGACTACAAC 115026 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || ||||| | || || ||||| | || | ||||||| Sbjct 115025 ATCCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTTCGCGGAGGAA 114977 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || ||| ||||||| | || || ||| | || Sbjct 116801 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTGGAGGTTGAGCCTTCA 116742 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| ||||| || || ||||| || || || Sbjct 116741 GACACCATTGAAAACGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 116682 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||||||| | || || | |||||| | || ||||| Sbjct 116681 CAGCGATTGATCTTCGCCGGCAAACAACTGGAGGACGGACGCACTCTTTCTGACTACAAC 116622 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||| || |||||||| || Sbjct 116621 ATTCAGAAGGAGTCCACACTTCATTTAGTCCT 116590 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || ||||||||||| || || ||||||| | || || || | ||| Sbjct 115433 ATGCAGATATTCGTGAAGACTTTGACTGGCAAGACCATCACCCTGGAGGTCGAACCCTCT 115374 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| ||||| |||||| ||||| || || || || || || || Sbjct 115373 GATACCATCGAGAATGTGAAGGCTAAAATCCAAGACAAGGAGGGCATCCCCCCAGATCAG 115314 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || | ||||||| ||||| | || ||||| Sbjct 115313 CAGCGTTTGATCTTCGCCGGAAAGCAGCTTGAAGATGGACGCACCCTTTCGGACTACAAC 115254 Query 25179 ATTCAAAAAGAATCCAC 25195 || || || || ||||| Sbjct 115253 ATCCAGAAGGAGTCCAC 115237 >seq4121 Length=254077 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| |||| || ||| | ||| Sbjct 189721 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCTTCT 189662 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| ||||| || ||| ||||| || || || || || || || Sbjct 189661 GATACCATCGAAAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 189602 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| |||||||| || | || |||| |||||| | ||| ||||| Sbjct 189601 CAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACTACAAC 189542 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || | ||||| ||||| Sbjct 189541 ATCCAGAAGGAGTCTACTTTGCATTTGGTGCT 189510 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||||||||| || || ||||||| | || || || | || Sbjct 190406 AATGCAAATTTTTGTGAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTCGAACCCTC 190347 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| | ||| || ||| ||||| || || || || || || || Sbjct 190346 CGATACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCA 190287 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || || || || | || || | ||||| || |||||| || Sbjct 190286 GCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTATAA 190227 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || || || Sbjct 190226 CATCCAGAAGGAGTCCACCCTTCACTTGGTCCT 190194 >seq5134 Length=897107 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || || | || Sbjct 635707 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCTTCG 635766 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| |||| || | ||| ||||||||||| ||||| || || Sbjct 635767 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 635822 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || || ||||| || | ||||||| ||||| | || || Sbjct 635823 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 635882 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || ||||| | || || ||||| Sbjct 635883 TAACATTCAGAAGGAGTCCACTTTGCACTTGGTGCT 635918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433297722966395