Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5516 217 2e-51 seq5465 118 1e-21 seq5326 113 5e-20 seq5256 113 5e-20 seq5062 84.2 2e-11 >seq5516 Length=367667 Score = 217 bits (240), Expect = 2e-51 Identities = 548/825 (66%), Gaps = 10/825 (1%) Strand=Plus/Plus Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865 ||||| || || || || || |||||||| || ||||| || |||| || ||| | | Sbjct 269697 TGGTACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCC 269756 Query 92866 ACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAATAAT 92923 | | ||| || ||||| | || || ||| | || ||| || || || Sbjct 269757 ATGAAGTTGAAGGGGTTCTTCGTATTGTAGATCTTGCCGACGCCCAATTCCACCAGCAAG 269816 Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 | ||| || || || || |||||||| ||||||| ||| |||||||| || || || || Sbjct 269817 CGATCCGCCACGAACTCGATGTACTGCGACATCAGATCGCAATTCATGCC--GATGAGGT 269874 Query 92984 ACA--GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTT 93041 || || || || ||||| | ||| || | || || | || || ||| | ||| | Sbjct 269875 TCACGGGCAGGGCATCGGTGAGGAACTCCTGTTCAATGGCCACTGCATCTCGGATGATCT 269934 Query 93042 CTATTACTCTACTATTTG-GTGGTTTTTGTACGACATAATTGTACATTAAGCACG-CAAA 93099 | || | | || | | ||| || || | | | | |||| | ||||| |||| Sbjct 269935 CAATGATGCG-CTCGCGGCGGGGTCGCTGCACCAAGTGCTGGAACATCA-GCACGGCAAA 269992 Query 93100 GTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAA 93159 |||| || | || |||||||| || || | ||| ||| ||| || | || || | Sbjct 269993 GTCGCAGTGAAGGCCCTCGTCTCGGGAGATAAGCTCGTTGGAGAAGGTCAGTCCCGGCAT 270052 Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTC 93219 ||| || || ||||| ||||| || || || || || || || || || || || || Sbjct 270053 CAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTC 270112 Query 93220 CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTT 93279 ||||| || || || | || || || | ||||| || || || | |||||| Sbjct 270113 GACGGCAGCGAAGGCAATGATGCGCTCTCCGAAATTGGCCGACTTGGAGGAGATCCAGGA 270172 Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339 | |||||| || || || ||| | | || | || ||||| ||||| || ||||| Sbjct 270173 AAGAGCCCAGTCCGCCTTGCGCTTCACAGCCGGCATCGTCTCGATGGCGTTGAACAGGTA 270232 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 || |||| || || || || |||||||| ||||| | || | ||||| || || || Sbjct 270233 TTCCCGCTGGTGCGGGTCCCGGATGTATGTGTCGATCAGCACACTGTACATCTCCGAGTG 270292 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 || |||||||| || |||||||| |||||||| || | || ||||||||||| || || Sbjct 270293 CACGTTCTCCATGGCGATTTGGAAGCCGTAGAAGCAGCGTGCCTCCGTGATCTGAACCTC 270352 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 || || | ||| || || || ||||| || || |||||||| || || || || || Sbjct 270353 CTGGCTGAAGCGCTCGACCAGGTTCTCATTTACGATGCCATCGGAGGCGGCGAAGAAGGC 270412 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 || | ||| || || || ||| ||||| || || | ||| |||| || || Sbjct 270413 CAGCACGTGCGAGATGAAGTGGCGCTCGTCATCCTTCAGGCGGTGCCAGTCGGTCAGGTC 270472 Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || ||||| || || || || ||||| || || || || || Sbjct 270473 CTTGGACAGATCCACCTCCTCCACTGTCCAGAAAGAGGCCTCAGC 270517 >seq5465 Length=2419304 Score = 118 bits (130), Expect = 1e-21 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| |||||||||||||||||||||| |||||||| | | ||| Sbjct 2355211 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAG 2355152 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||||| Sbjct 2355151 CGTGGGTTCGAACCCCACACCTGACAA 2355125 >seq5326 Length=307334 Score = 113 bits (124), Expect = 5e-20 Identities = 79/89 (89%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||| ||||||||||||| |||||||||||||||||||||| |||||||| | | || Sbjct 279582 ACAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGA 279523 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||| |||| Sbjct 279522 GCGTGGGTTCGAACCCCACACCTGGCAAA 279494 >seq5256 Length=156024 Score = 113 bits (124), Expect = 5e-20 Identities = 79/89 (89%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||| ||||||||||||| |||||||||||||||||||||| |||||||| | | || Sbjct 98162 ACAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGA 98103 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||| |||| Sbjct 98102 GCGTGGGTTCGAACCCCACACCTGGCAAA 98074 >seq5062 Length=476003 Score = 84.2 bits (92), Expect = 2e-11 Identities = 77/95 (81%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 162749 TTACCTCTTGTGAGAATCGAACTCACGACAACCGGCGTATAAGACCGATGCTCTAACCAC 162808 || |||| |||||| || ||||||||||| | || || |||||| ||||||| |||| Sbjct 405778 TTGCCTCCTGTGAGGATTGAACTCACGACCCCTGGTTTACAAGACCAATGCTCT-GCCAC 405720 Query 162809 TGAGCTAAAGAGGCT-ACATTAAAACTCTGAAAAA 162842 ||||||||||||||| |||| || ||||||||| Sbjct 405719 TGAGCTAAAGAGGCTCACATAAACGGTCTGAAAAA 405685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556820893962920